Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L01
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    36   0.005
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.4  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   9.5  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 20/83 (24%), Positives = 43/83 (51%)
 Frame = +1

Query: 223 LQETMXTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMFLLKPXSLPNI 402
           ++E    +LL+L+   +G K  + +  L+G +G +   + L++H +  ++     ++PN 
Sbjct: 5   VKEKATFKLLDLIDSVTGKKSLLLERDLSGILGQIVTTNTLQEHGIPQVYWFNE-NIPND 63

Query: 403 TVKHIIFISRPKLSLMDLVADYI 471
             K  I++ RP      LVA ++
Sbjct: 64  IEKKTIYLCRPTYENAKLVATHV 86


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 389 AYPI*PSNILYLLVDPNFH*WIWLL--ITFYQLRAKQTAPVEFHLFFVP 529
           +YP  P N   ++  P+F  W+W    I     +  Q A ++FH    P
Sbjct: 21  SYPEVPLNCSLVIDGPSFAFWLWFSQGIVCSDFQGYQKAVLDFHHLLTP 69


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 241 TELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNMFLLKP 384
           TE+L  L+ Y   +  + DD++     LV  Y   +DH   +  ++ P
Sbjct: 77  TEVLQFLKTYVEDESFVGDDFVMPKYTLVLPYRVYRDHVKKHGDIITP 124


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 471 NVISNQIHQ*KFGSTNKYNMFDGY 400
           NVIS+     K G T+ Y+ FDG+
Sbjct: 366 NVISSMSKARKLGYTDYYDTFDGF 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,645
Number of Sequences: 5004
Number of extensions: 44072
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)