Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L01
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0622 - 8175226-8175312,8175674-8175763,8176370-8176457,817...    50   2e-06
06_03_0468 - 21083754-21083869,21083986-21084069,21085633-210859...    27   9.9  

>04_01_0622 -
           8175226-8175312,8175674-8175763,8176370-8176457,
           8177021-8177095,8177754-8177821,8177898-8177955,
           8178862-8178942,8179968-8180038,8180144-8180225,
           8182327-8182449,8183023-8183129,8183201-8183263,
           8183877-8183936,8184100-8184151,8185566-8185598,
           8185820-8185871,8185965-8186028,8186693-8186749,
           8186962-8187006,8187083-8187190,8188147-8188212,
           8188382-8188492,8190841-8191035,8191419-8191499,
           8191591-8191630,8191764-8191816
          Length = 669

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 32/94 (34%), Positives = 49/94 (52%)
 Frame = +1

Query: 190 HLAGGRLNVALLQETMXTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEVNNM 369
           +L    LN+A L+E    +LLN+L+   G K  + D  LAG + L+ Q S LK++    +
Sbjct: 6   NLDNAPLNLAALREQSQKDLLNILKSIRGKKCVVIDPKLAGTLSLILQTSLLKEYGA-EL 64

Query: 370 FLLKPXSLPNITVKHIIFISRPKLSLMDLVADYI 471
            LL    L     K I+++ R +L  M L+A  I
Sbjct: 65  RLLSAEPLQTECAK-ILYLVRSELKFMKLIASQI 97



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 506 EFHLFFVPRKSELCKVHLTNXGVVSNMTIEXFKCDIIPFESDVMSLEL 649
           EF L+FVPR++  C+  L    V   +T+  +   ++P + DV+  EL
Sbjct: 108 EFFLYFVPRRTVACEKILEEEKVHQKLTLGEYPLYLVPLDEDVICFEL 155


>06_03_0468 -
           21083754-21083869,21083986-21084069,21085633-21085920,
           21087525-21087687
          Length = 216

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 328 AQYSF-LKDHEVNNMFLLKPXSLPNITVKHIIFISRPKLSLMDLVADYI 471
           ++YSF   DH  + +F ++P   P    +  IFI R  L+ ++   D+I
Sbjct: 58  SEYSFGAHDHPTSGVFEVEPKCCPGFMYRCSIFIGRTSLNPLEF-RDFI 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,563
Number of Sequences: 37544
Number of extensions: 248691
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)