Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L01
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016617-1|AAH16617.1|  596|Homo sapiens vacuolar protein sortin...   109   8e-24
AF439857-1|AAL33577.1|  596|Homo sapiens vacuolar sorting protei...   109   8e-24

>BC016617-1|AAH16617.1|  596|Homo sapiens vacuolar protein sorting
           33 homolog A (S. cerevisiae) protein.
          Length = 596

 Score =  109 bits (262), Expect = 8e-24
 Identities = 49/99 (49%), Positives = 70/99 (70%)
 Frame = +1

Query: 181 MSSHLAGGRLNVALLQETMXTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEV 360
           M++HL+ GR+N+ +L+E +  EL   L + +G K  +WD++L GP GL+AQYS LK+HEV
Sbjct: 1   MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEV 60

Query: 361 NNMFLLKPXSLPNITVKHIIFISRPKLSLMDLVADYILS 477
             MF LK   LP   VK+IIF  RP+L LMD++A+ +LS
Sbjct: 61  EKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLS 99



 Score = 47.6 bits (108), Expect = 4e-05
 Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +2

Query: 506 EFHLFFVPRKSELCKVHLTNXGVV-SNMTIEXFKCDIIPFESDVMSLE 646
           +FH+ FVPR+S LC+  L + GV+ S +  E +  D+IPF+ D++S+E
Sbjct: 108 DFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSME 155


>AF439857-1|AAL33577.1|  596|Homo sapiens vacuolar sorting protein
           33A protein.
          Length = 596

 Score =  109 bits (262), Expect = 8e-24
 Identities = 49/99 (49%), Positives = 70/99 (70%)
 Frame = +1

Query: 181 MSSHLAGGRLNVALLQETMXTELLNLLQQYSGPKVTIWDDWLAGPVGLVAQYSFLKDHEV 360
           M++HL+ GR+N+ +L+E +  EL   L + +G K  +WD++L GP GL+AQYS LK+HEV
Sbjct: 1   MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEV 60

Query: 361 NNMFLLKPXSLPNITVKHIIFISRPKLSLMDLVADYILS 477
             MF LK   LP   VK+IIF  RP+L LMD++A+ +LS
Sbjct: 61  EKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLS 99



 Score = 47.6 bits (108), Expect = 4e-05
 Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +2

Query: 506 EFHLFFVPRKSELCKVHLTNXGVV-SNMTIEXFKCDIIPFESDVMSLE 646
           +FH+ FVPR+S LC+  L + GV+ S +  E +  D+IPF+ D++S+E
Sbjct: 108 DFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSME 155


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,212,085
Number of Sequences: 237096
Number of extensions: 1580951
Number of successful extensions: 2102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2100
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)