Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L01
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    27   8.8  

>M77697-6|AAA27901.2|  603|Caenorhabditis elegans Hypothetical
           protein B0303.9 protein.
          Length = 603

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +1

Query: 247 LLNLLQQYSGPKVTIWDD--WLAGPVGLVAQYSFLKDHEVNNMFLLKPXSLPNITVKHII 420
           L ++L    G K  +WD    +   V L A  S L  H V     ++     + +  H++
Sbjct: 33  LFSVLDSLDGNKTIVWDRDRSVMHRVNLFAGASVLAAHGVVANHSIETKK--SASTPHVV 90

Query: 421 FISRPKLSLMDLVADYILSIKGQA 492
           F   P +  +DL+ DYI +++  +
Sbjct: 91  FFLAPTMVSLDLLCDYIDNVRNDS 114


>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 530 RKSELCKVHLTNXGVVSNMTIEXFKCDIIPFESDVMSLE 646
           R+ E C +   + GV+ ++T       ++P ESD+ SL+
Sbjct: 118 RQLEECDLAFESSGVIGHITQLSLNMCLLPLESDLFSLQ 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,293,682
Number of Sequences: 27780
Number of extensions: 246511
Number of successful extensions: 495
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)