Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_K17
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.1  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   5.5  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 139 NQL*PSNPRRILRQSLQGFNRI--HTHRHLIPQVHLFLHHLRGIVHMVLLLH 288
           N+L P   +++L+   +    I  H H HLIP ++ FL     + H ++L H
Sbjct: 122 NKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFFL-----LYHQIILSH 168


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = +2

Query: 170 FCGSPSRASTAYIPTGI*SPRCTFSSTTSGV*SIWCSSSTNRLCTKLRSHKHYNTTSYNH 349
           F  SP+ +S+    +       +FSSTTS   S   SSS +   +   S      TS + 
Sbjct: 332 FSSSPTSSSSTISSSSSSPSSSSFSSTTS---SSKSSSSFSSTVSSSSSTSSSTLTSSSS 388

Query: 350 SRSLPRMSSWH 382
           S S P  SS H
Sbjct: 389 SSSRPASSSSH 399


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 275 TIWTIPRRWWRKRCTWGIRCLWVC 204
           ++W +PR  W     + +  LW+C
Sbjct: 327 SVWVLPRSSWVLASFYSLHFLWLC 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,370
Number of Sequences: 5004
Number of extensions: 50618
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)