Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_K17
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-6|CAA90999.2| 119|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 29 2.9
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 29 2.9
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 29 2.9
AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical... 29 3.8
AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical ... 28 5.0
Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical pr... 28 6.7
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 8.8
AL031627-21|CAA20970.1| 326|Caenorhabditis elegans Hypothetical... 27 8.8
>Z54238-6|CAA90999.2| 119|Caenorhabditis elegans Hypothetical
protein T28C6.8 protein.
Length = 119
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 357 ACPACRVGILEXDFTCLGILCAILFFPLGILCCLALKNRRCSNC 488
+CPAC ++ F+ IL AI FP GI CC+ K C+ C
Sbjct: 10 SCPACTQKKVKSRFSWRAILYAIFCFPCGIYCCMKRKTYYCTQC 53
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = -1
Query: 338 WWY---YNVCGSVAWYKACLWRRSTIWTIPRRWWRKRCTWGIRCLWVCMRLKPWRDCRRI 168
WWY N+ S CLWRR ++ K+C +C+ M R +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306
Query: 167 RRGLLGHSWFLH*TE 123
LG + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = -1
Query: 338 WWY---YNVCGSVAWYKACLWRRSTIWTIPRRWWRKRCTWGIRCLWVCMRLKPWRDCRRI 168
WWY N+ S CLWRR ++ K+C +C+ M R +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306
Query: 167 RRGLLGHSWFLH*TE 123
LG + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = -1
Query: 338 WWY---YNVCGSVAWYKACLWRRSTIWTIPRRWWRKRCTWGIRCLWVCMRLKPWRDCRRI 168
WWY N+ S CLWRR ++ K+C +C+ M R +
Sbjct: 1247 WWYERLVNITYSPKTKILCLWRRHDDKVHMHKFHTKKCRELYQCMKAAMERAAARGKVNV 1306
Query: 167 RRGLLGHSWFLH*TE 123
LG + +H TE
Sbjct: 1307 EGRALGGEFPVHDTE 1321
>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
protein Y69A2AR.31 protein.
Length = 1219
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 248 TTSGV*SIWCSSSTNRLCTKLRSHKHYNTTSYNHSRS 358
T SG+ C+SS + C +R H +YN Y S+S
Sbjct: 255 TWSGLGDCQCASSNSSDCHWIRLHTNYNKCIYEISKS 291
>AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical
protein C30F12.4 protein.
Length = 246
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Frame = +3
Query: 351 VGA--CPACRVGIL--------EXDFTCLGILCAILFFPLGILCCLALKNRRCSNCGAMF 500
VGA CP CR GI+ + CL + C L L ++C C CG +
Sbjct: 170 VGALVCPKCRKGIIMRKQDRLRKKILMCLAVCCCPLTCCLPLICICCNYVDACGACGKKY 229
Query: 501 G 503
G
Sbjct: 230 G 230
>Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical
protein F36G3.3 protein.
Length = 141
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Frame = +3
Query: 360 CPACRVGILEXDFTCLGILCAILF---FPLGILCC----LALKN-----RRCSNCGAMFG 503
CP CR+ I+ + G+L I F F G CC L++ C NC AM G
Sbjct: 77 CPYCRMDIVTRTKSVYGLLTWIFFAALFLFGCWCCCFLPFCLRSCKDIIHTCPNCRAMIG 136
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 146 CDRATPAVFCGSPSRASTAYIPTGI*SPRCTFSSTTSGV*SIWCSSS 286
CDR + V G+P + + + P+G +CTFS + + +C SS
Sbjct: 1411 CDRGSAYVVNGTPKQCTASPCPSGY---KCTFSKKSK---NYYCCSS 1451
>AL031627-21|CAA20970.1| 326|Caenorhabditis elegans Hypothetical
protein Y102A5C.33 protein.
Length = 326
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 211 HRHLIPQVHLFLHHLRGIVHMVLLLHK 291
HRHL Q H+++H I +++LL K
Sbjct: 217 HRHLHSQQHIYIHEYMFIQSIMVLLFK 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,845,309
Number of Sequences: 27780
Number of extensions: 292754
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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