Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_K16
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    24   4.7  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    23   8.3  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    23   8.3  

>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 150 IILFSLIKLPMFICKMINNHLSNVLPRKKKSQLPP 46
           +I +SL K P FIC ++ N  ++   R   S++PP
Sbjct: 703 LISYSLDK-PEFICTLLENIGTDENARNLLSKIPP 736


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 146 FYFHLLNFLCLYVK*LTTISAMFCLEKRNL 57
           F   L N LC ++   TT S   CL KR L
Sbjct: 51  FLSQLENILCFFLVYRTTYSFGVCLMKRFL 80


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 147 ILFSLIKL--PM--FICKMINNHLSNVLPRKKKSQLPPNIHML 31
           +LF+L+++  P   FI + I  HL N +P  K      ++H L
Sbjct: 757 VLFTLVRIMGPFTPFITENIYQHLRNYMPIDKNEISLRSVHFL 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,703
Number of Sequences: 5004
Number of extensions: 8690
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)