Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_K12
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 217 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 342
           S Y G    L  H PT       +V   + ++HPN   N  +
Sbjct: 370 STYSGSPTELPKHLPTSLTKSKMEVMELSDLHHPNCKINRKV 411


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 178 DLQPCGPAEHCAGGSLP 128
           D+  CGP E   G +LP
Sbjct: 16  DMTGCGPPEEETGSNLP 32


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 178 DLQPCGPAEHCAGGSLP 128
           D+  CGP E   G +LP
Sbjct: 16  DMTGCGPPEEETGSNLP 32


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 178 DLQPCGPAEHCAGGSLP 128
           D+  CGP E   G +LP
Sbjct: 16  DMTGCGPPEEETGSNLP 32


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 382 TISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNEL 501
           TI   ++ I  +L   +P DP +  +   YK D  K + L
Sbjct: 146 TILAAIVGIVMVLII-HPGDPRIKSVVTAYKADYTKISTL 184


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 201 NCGLPMEQIFSRVGLPNIVLVDPCPDLV 118
           N G P E +   V +P   +++  P+LV
Sbjct: 94  NAGTPPEAVSYNVAVPTKSILEKKPELV 121


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 268 YPFKPPKVAFTTRIYHPNINSN 333
           Y F  P+V +T + +HP    N
Sbjct: 138 YNFDYPQVPYTVKNFHPRCAVN 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,184
Number of Sequences: 438
Number of extensions: 4538
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)