Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_K10
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    27   2.3  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    27   3.1  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    26   5.4  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    25   7.2  

>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 570 GXVLGEGAYASVQTCVNIYTGLEFXVK 650
           G +LGEG+Y++V T     T  E+ +K
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIK 128


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 94  VFVYYLPAQFTYILLDGGAFFVNFSNYFWRFFF 192
           VF++ L      I +   A F+ +++Y WRF F
Sbjct: 233 VFLHVLGDALGNIGVISAALFIKYTDYSWRFLF 265


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 570 GXVLGEGAYASVQTCVNIYTGLEFXVK 650
           G VLG G YA+V+  V+I T   +  K
Sbjct: 34  GRVLGGGTYATVREAVHIETNKMYAAK 60


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 VLGEGAYASVQTCVNIYTGLEFXVK 650
           +LG+G Y SV    N + G+E+ +K
Sbjct: 229 LLGKGGYGSVYKARNKFDGVEYALK 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,303
Number of Sequences: 5004
Number of extensions: 39956
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)