Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_K08
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    29   0.43 
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   7.1  

>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +3

Query: 153 NLILINAAINTENG---YCVSKDSCEETKNTFSDKKWLFYD---VNPP 278
           N I    A+ T+NG   YC SK   EE    +  +K   YD   +NPP
Sbjct: 149 NPITYEEALTTDNGIVAYCASKKLAEEAAREYVKEKKPSYDICTINPP 196


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 8/43 (18%), Positives = 22/43 (51%)
 Frame = +3

Query: 141 TIFCNLILINAAINTENGYCVSKDSCEETKNTFSDKKWLFYDV 269
           T++   ++I+  +     YC    + +  +N+F ++ W+  D+
Sbjct: 14  TVYNRFVIIHGRVGPRASYCPQTINVKHHENSFPEQTWVVTDL 56


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 106 QQIKSNQFVYLSMFTLFXDKPPNNRLSQREVL 11
           QQ+K+N   +  + T   D PP NR+   E +
Sbjct: 90  QQLKTNPLEHPILITEPFDNPPENRVKTLETM 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,874
Number of Sequences: 5004
Number of extensions: 54742
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)