Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_K07
(606 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 204 2e-52
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 204 2e-52
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 204 2e-52
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 204 2e-52
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 202 8e-52
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 184 2e-46
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 36 0.15
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 36 0.15
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 29 9.6
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 29 9.6
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 29 9.6
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 204 bits (498), Expect = 2e-52
Identities = 105/178 (58%), Positives = 124/178 (69%), Gaps = 2/178 (1%)
Frame = +1
Query: 46 HKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRL 225
H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+SR+
Sbjct: 7 HNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRM 66
Query: 226 ARHMKKPTREGLIAVVVGTVTNDVRLYXIPXMTVAALHVTEKARARILAAGGEILTFDQL 405
R MK P RE AVVVGT+T+DVR+ +P + V AL VT +AR+RIL AGG+ILTFDQL
Sbjct: 67 IRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQL 126
Query: 406 ALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPXRRAN 573
AL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 127 ALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 204 bits (498), Expect = 2e-52
Identities = 105/178 (58%), Positives = 124/178 (69%), Gaps = 2/178 (1%)
Frame = +1
Query: 46 HKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRL 225
H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+SR+
Sbjct: 7 HNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRM 66
Query: 226 ARHMKKPTREGLIAVVVGTVTNDVRLYXIPXMTVAALHVTEKARARILAAGGEILTFDQL 405
R MK P RE AVVVGT+T+DVR+ +P + V AL VT +AR+RIL AGG+ILTFDQL
Sbjct: 67 IRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQL 126
Query: 406 ALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPXRRAN 573
AL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 127 ALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 204 bits (498), Expect = 2e-52
Identities = 105/178 (58%), Positives = 124/178 (69%), Gaps = 2/178 (1%)
Frame = +1
Query: 46 HKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRL 225
H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+SR+
Sbjct: 7 HNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRM 66
Query: 226 ARHMKKPTREGLIAVVVGTVTNDVRLYXIPXMTVAALHVTEKARARILAAGGEILTFDQL 405
R MK P RE AVVVGT+T+DVR+ +P + V AL VT +AR+RIL AGG+ILTFDQL
Sbjct: 67 IRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQL 126
Query: 406 ALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPXRRAN 573
AL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 127 ALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 204 bits (498), Expect = 2e-52
Identities = 105/178 (58%), Positives = 124/178 (69%), Gaps = 2/178 (1%)
Frame = +1
Query: 46 HKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRL 225
H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+SR+
Sbjct: 7 HNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRM 66
Query: 226 ARHMKKPTREGLIAVVVGTVTNDVRLYXIPXMTVAALHVTEKARARILAAGGEILTFDQL 405
R MK P RE AVVVGT+T+DVR+ +P + V AL VT +AR+RIL AGG+ILTFDQL
Sbjct: 67 IRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQL 126
Query: 406 ALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPXRRAN 573
AL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 127 ALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 202 bits (493), Expect = 8e-52
Identities = 104/178 (58%), Positives = 123/178 (69%), Gaps = 2/178 (1%)
Frame = +1
Query: 46 HKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRL 225
H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+ +SR+
Sbjct: 7 HNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLCLSRM 66
Query: 226 ARHMKKPTREGLIAVVVGTVTNDVRLYXIPXMTVAALHVTEKARARILAAGGEILTFDQL 405
R MK P RE AVVVGT+T+DVR+ +P + V AL VT +AR+RIL AGG+ILTFDQL
Sbjct: 67 IRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQL 126
Query: 406 ALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPXRRAN 573
AL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG E+AR RRA+
Sbjct: 127 ALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERAR-GRRAS 183
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 184 bits (449), Expect = 2e-46
Identities = 92/146 (63%), Positives = 111/146 (76%), Gaps = 2/146 (1%)
Frame = +1
Query: 142 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYXIPXM 321
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+ +P +
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 322 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGA 501
V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 135
Query: 502 PRSHTKPYVRTKGH--EKARPXRRAN 573
P SHTKPYVR+KG E+AR RRA+
Sbjct: 136 PHSHTKPYVRSKGRKFERAR-GRRAS 160
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 35.5 bits (78), Expect = 0.15
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Frame = +3
Query: 264 CRGSGDSHK*RETVQXTEXDGGCSSCYRKSSCTHFGCWRRNSYF-----*SAGSSCSDWQ 428
CR SG S R CS +S T CW + F S+G+S +
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWSSGTSSTPCS 89
Query: 429 EDSTGTRSAKC----S*GSASLWPCSRSTALSH*TLCSHQGT 542
S+GT S C S S++ W C S S +C GT
Sbjct: 90 CRSSGTSSTSCSCWSSGTSSTSWSCKSSGTSSTCYMCLSSGT 131
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 35.5 bits (78), Expect = 0.15
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Frame = +3
Query: 264 CRGSGDSHK*RETVQXTEXDGGCSSCYRKSSCTHFGCWRRNSYF-----*SAGSSCSDWQ 428
CR SG S R CS +S T CW + F S+G+S +
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWSSGTSSTPCS 89
Query: 429 EDSTGTRSAKC----S*GSASLWPCSRSTALSH*TLCSHQGT 542
S+GT S C S S++ W C S S +C GT
Sbjct: 90 CRSSGTSSTSCSCWSSGTSSTSWSCKSSGTSSTCYMCLSSGT 131
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 29.5 bits (63), Expect = 9.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -1
Query: 354 SFFGNMKSSHRHXRYXVQSHVICDCPHYHGNQTLTSWLLHV 232
+F N+KSS R + C H Q SWLL+V
Sbjct: 138 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 29.5 bits (63), Expect = 9.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -1
Query: 354 SFFGNMKSSHRHXRYXVQSHVICDCPHYHGNQTLTSWLLHV 232
+F N+KSS R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 29.5 bits (63), Expect = 9.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -1
Query: 354 SFFGNMKSSHRHXRYXVQSHVICDCPHYHGNQTLTSWLLHV 232
+F N+KSS R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,667,016
Number of Sequences: 237096
Number of extensions: 2124965
Number of successful extensions: 4571
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4569
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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