Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_K02
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    56   3e-09
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    38   0.001
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    38   0.001
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    29   0.78 
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    27   1.8  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    27   3.1  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   7.3  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    25   7.3  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
 Frame = +3

Query: 255 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIY 434
           +++   AGSRY+P A  G+SH+L   A  TT+  S+  I R+   +G  +     R  I 
Sbjct: 45  LSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHII 102

Query: 435 YTLEATQDKLNDALEILNNLVSNQEFRPWELNDNA---PRLKYDIISLPPQIRAVDLLHK 605
            T     + L     +L  +V   +F P++L +      R++ ++        A+  LH+
Sbjct: 103 LTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESELFREDILRVAMAKLHE 162

Query: 606 AAYRRGLGNSLFI 644
            A+ RG+GN +++
Sbjct: 163 KAFHRGIGNEVYL 175


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
 Frame = +3

Query: 270 KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTLEA 449
           KAGSRYE +   G+SH +   A   T+      ++ KL  +G     S  R  + Y    
Sbjct: 74  KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAV 133

Query: 450 TQDKLNDALEILNNLVSNQEFRPWELNDNAPRLKYDIISL--PPQIRAVDLLHKAAYRRG 623
             D +    ++L   V   + +  +L      + Y+   L   P     +  H  A++  
Sbjct: 134 FNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYENSELWTKPDALLGEFAHVTAFQNN 193

Query: 624 -LGNSLFISPXR 656
            LGN L  +P +
Sbjct: 194 TLGNCLLCTPDK 205


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 23/83 (27%), Positives = 40/83 (48%)
 Frame = +3

Query: 255 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIY 434
           V +   AGSR E     G +H L   A   TKN S   ++ +    GA++ A   R    
Sbjct: 46  VLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTV 105

Query: 435 YTLEATQDKLNDALEILNNLVSN 503
           Y   A ++ + +A+ +L ++++N
Sbjct: 106 YYAHAFKNAVPNAVAVLADILTN 128


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +3

Query: 177 DVRIQSSVLPNKTFVAA---LDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTT 347
           DV+ +S  LP   + A     D+GS  +R  +   +    E   E+G+ H+LR     + 
Sbjct: 132 DVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASV 191

Query: 348 KNISSFLIQRKLSQIG 395
             +++ + Q+  S  G
Sbjct: 192 GTLATRVTQQAQSLQG 207


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 996

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 22/83 (26%), Positives = 35/83 (42%)
 Frame = +3

Query: 165  AVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLT 344
            A  + VR+Q   LP+  FV     GSP                Q +LG +  + +  G+T
Sbjct: 857  APHRAVRLQIEDLPSNVFVTNRGRGSPA--------------DQYDLGAAQFITAVNGVT 902

Query: 345  TKNISSFLIQRKLSQIGAYVXAS 413
            T N+  F+ + +     +YV  S
Sbjct: 903  TLNLEDFVREIRKIDDNSYVRVS 925


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -2

Query: 307 PNSACGS*REPALKAIVTRVTGEPLSKAATNVLLGKTLDWILTSFFTAGAA 155
           PN ACG+ R+   + + T ++   +  +A N      LDW + S +   A+
Sbjct: 202 PNCACGAKRQLEFQILPTLISSMNIDHSAKN-----ALDWGILSIYVCSAS 247


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 288 EPQAELGLSHVLRS-AAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTL 443
           E + +L   H+L +  AGL T++  SF+ + ++SQ+ +    S D  +  Y++
Sbjct: 298 EKRQKLERDHMLMAQCAGLMTRSDKSFIARIQISQLMSEDPESDDFYYRVYSI 350


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 189 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFL 368
           Q+ ++   TFV A      + RV  +FK+   + P A    +     +  LTT  + S  
Sbjct: 174 QNKLISQPTFVTASHEAQHLLRVQTSFKSSFTFLPSAINTATRSKLPSMRLTTVQVPSRS 233

Query: 369 IQ 374
           +Q
Sbjct: 234 VQ 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,588
Number of Sequences: 5004
Number of extensions: 51944
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)