Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_K02
(656 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c ... 118 2e-26
BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein. 118 2e-26
J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrom... 116 6e-26
BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein. 55 3e-07
L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c re... 54 4e-07
D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein. 54 4e-07
BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c ... 54 4e-07
BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein. 52 2e-06
>BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c
reductase core protein II protein.
Length = 453
Score = 118 bits (284), Expect = 2e-26
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Frame = +3
Query: 150 AQAAPA--VKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVL 323
A AAPA + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H+L
Sbjct: 24 ATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLL 83
Query: 324 RSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTLEATQDKLNDALEILNNLVSN 503
R + LTTK SSF I R + +G + + R + YT+E + ++ +E L N+ +
Sbjct: 84 RLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTA 143
Query: 504 QEFRPWELNDNAPRLKYD--IISLPPQIRAVDLLHKAAYRRGLGNSLFISPXR 656
EFR WE+ D P+LK D + PQ ++ LH AAYR L N L+ R
Sbjct: 144 PEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALANPLYCPDYR 196
>BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein.
Length = 453
Score = 118 bits (284), Expect = 2e-26
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Frame = +3
Query: 150 AQAAPA--VKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVL 323
A AAPA + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H+L
Sbjct: 24 ATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLL 83
Query: 324 RSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTLEATQDKLNDALEILNNLVSN 503
R + LTTK SSF I R + +G + + R + YT+E + ++ +E L N+ +
Sbjct: 84 RLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTA 143
Query: 504 QEFRPWELNDNAPRLKYD--IISLPPQIRAVDLLHKAAYRRGLGNSLFISPXR 656
EFR WE+ D P+LK D + PQ ++ LH AAYR L N L+ R
Sbjct: 144 PEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNALANPLYCPDYR 196
>J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrome
bc-1 complex core protein II mRNA, complete cds. ).
Length = 453
Score = 116 bits (280), Expect = 6e-26
Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 4/173 (2%)
Frame = +3
Query: 150 AQAAPA--VKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVL 323
A AAPA + ++ + LPN +A+L+N SPV+R+ + KAGSRYE + LG +H+L
Sbjct: 24 ATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLL 83
Query: 324 RSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTLEATQDKLNDALEILNNLVSN 503
R + LTTK SSF I R + +G + + R + YT+E + ++ +E L N+ +
Sbjct: 84 RLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTA 143
Query: 504 QEFRPWELNDNAPRLKYD--IISLPPQIRAVDLLHKAAYRRGLGNSLFISPXR 656
EFR WE+ D P+LK D + PQ ++ LH AAY+ L N L+ R
Sbjct: 144 PEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYQNALANPLYCPDYR 196
>BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein.
Length = 490
Score = 54.8 bits (126), Expect = 3e-07
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Frame = +3
Query: 144 RYAQAAPAVKKDV-RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHV 320
R QAA V +V + + L + VA+ D+G V + AGSRYE + G +H
Sbjct: 43 RSTQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHF 102
Query: 321 LRSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTLEATQDKLNDALEILNNLVS 500
L A TK S ++ ++ +GA++ A R Y +A L A+EIL +++
Sbjct: 103 LEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQ 162
Query: 501 NQEFRPWELNDNAPRLKYDIISLPPQIRAV--DLLHKAAYRR-GLGNSL 638
N E+ + ++ + ++ V D LH AY+ LG ++
Sbjct: 163 NSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTI 211
>L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core I protein protein.
Length = 480
Score = 54.0 bits (124), Expect = 4e-07
Identities = 37/132 (28%), Positives = 60/132 (45%)
Frame = +3
Query: 108 RSPPLFVMLRSGRYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRY 287
RSP L A A A++ Q S+L N VA+ + P V + GSR+
Sbjct: 22 RSPALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRF 81
Query: 288 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTLEATQDKLN 467
E + G + L A TKN +++++ +GA++ A R Y ++A L
Sbjct: 82 ETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLP 141
Query: 468 DALEILNNLVSN 503
A+E+L ++V N
Sbjct: 142 KAVELLGDIVQN 153
>D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein.
Length = 480
Score = 54.0 bits (124), Expect = 4e-07
Identities = 37/132 (28%), Positives = 60/132 (45%)
Frame = +3
Query: 108 RSPPLFVMLRSGRYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRY 287
RSP L A A A++ Q S+L N VA+ + P V + GSR+
Sbjct: 22 RSPALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRF 81
Query: 288 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTLEATQDKLN 467
E + G + L A TKN +++++ +GA++ A R Y ++A L
Sbjct: 82 ETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLP 141
Query: 468 DALEILNNLVSN 503
A+E+L ++V N
Sbjct: 142 KAVELLGDIVQN 153
>BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core protein I protein.
Length = 480
Score = 54.0 bits (124), Expect = 4e-07
Identities = 37/132 (28%), Positives = 60/132 (45%)
Frame = +3
Query: 108 RSPPLFVMLRSGRYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRY 287
RSP L A A A++ Q S+L N VA+ + P V + GSR+
Sbjct: 22 RSPALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRF 81
Query: 288 EPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTLEATQDKLN 467
E + G + L A TKN +++++ +GA++ A R Y ++A L
Sbjct: 82 ETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLP 141
Query: 468 DALEILNNLVSN 503
A+E+L ++V N
Sbjct: 142 KAVELLGDIVQN 153
>BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein.
Length = 480
Score = 52.0 bits (119), Expect = 2e-06
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Frame = +3
Query: 144 RYAQAAPAVKKDV-RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHV 320
R QAA V +V + + L + VA+ D+G V + AGSRYE + G +H
Sbjct: 34 RSTQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHF 93
Query: 321 LRSAAGLTTKNISSFLIQRKLSQIGAYVXASGDRXFIYYTLEATQDKLNDALEILNNLVS 500
A TK S ++ ++ +GA++ A R Y +A L A+EIL +++
Sbjct: 94 PEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQ 153
Query: 501 NQEFRPWELNDNAPRLKYDIISLPPQIRAV--DLLHKAAYRR-GLGNSL 638
N E+ + ++ + ++ V D LH AY+ LG ++
Sbjct: 154 NSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTI 202
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,650,275
Number of Sequences: 237096
Number of extensions: 1760441
Number of successful extensions: 2999
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2999
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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