Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_K02
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 274 LALVMNHKPNWD 309
           LAL +NH PN+D
Sbjct: 658 LALWLNHSPNYD 669



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +2

Query: 59  ILPKVSKNLRKWHPKLSXAP 118
           +LPK++  + +W+P     P
Sbjct: 519 VLPKLTLEVEEWNPLTDTVP 538


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 607 QPIVVDWVTRSSSR 648
           QPI   W+TRS +R
Sbjct: 81  QPISYKWITRSGTR 94


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 305 GIVACTTISCWTNNQ 349
           G+V  T+++CW  N+
Sbjct: 318 GLVGDTSLACWNENR 332


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 305 GIVACTTISCWTNNQ 349
           G+V+ T + CW  N+
Sbjct: 317 GLVSDTALGCWNENR 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,066
Number of Sequences: 438
Number of extensions: 3422
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)