Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J21
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    28   0.95 
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   3.8  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         26   5.1  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   8.9  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   8.9  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   8.9  
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    25   8.9  

>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 1   RTFNFVLSHFHVNPTAPSLQNAKTESINR 87
           +T+ FV++ F +  T PSL N+  E I +
Sbjct: 211 KTYGFVITLFEIGQTVPSLWNSTLEFIEK 239


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +2

Query: 2   ERLTSYLAIFM*IQQHQAFKMLKPKALTEVLTSS*YRRSRKHFVVESSRCTSS 160
           ERLT++      I +H+A  +   K L E  TSS +  S  H V++SS+ T S
Sbjct: 693 ERLTNFT--IEEINKHKAIGVALRKLLEEADTSSNFSSSNNH-VLDSSKHTVS 742


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 114 GVENTLLLNHQGALLAYSGYNDKDARVTAAIAS 212
           GV  TL  N+ G + AY G  +K    TAA+ S
Sbjct: 312 GVGRTLK-NNNGVIAAYKGIFEKVIEATAAVTS 343


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 404 ILSNSIDFFFQNAKTNSLIRI 342
           ILS  IDFFF+  KT    R+
Sbjct: 13  ILSILIDFFFREVKTRGSFRV 33


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 156 EVHLDDSTTKCFLLLLY*LDVKTSVNAFGFSILKAWCCWIYMKMAKYEVK 7
           E H  + T   F  LL  LD+  ++N       K+W  WIY      E K
Sbjct: 24  EEHDCERTVLAFFCLLG-LDLLNALNTIDDDDKKSWIEWIYKNYVTKESK 72


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 263 WTTFNTXXLFKWENCNHTSC-QFITVSLCE*G 355
           W  FNT  +  ++N  HT C Q + VS+   G
Sbjct: 355 WKLFNTLGIMDYKNRLHTICFQDLEVSIANYG 386


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 111 LY*LDVKTSVNAFGFSILKAWCC 43
           LY L+ K ++NA  FS  + W C
Sbjct: 227 LYSLEAKANINALVFSPNRYWLC 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,414
Number of Sequences: 5004
Number of extensions: 35534
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)