Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J20
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   140   1e-34
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   140   1e-34
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   6.3  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   8.4  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           25   8.4  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   8.4  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  140 bits (340), Expect = 1e-34
 Identities = 68/157 (43%), Positives = 92/157 (58%)
 Frame = +2

Query: 119 LVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 298
           + Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ 
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96

Query: 299 AXYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYLDVGLXRTTTG 478
           A Y+TG                              E +++GP  F  +LDVGL RT+TG
Sbjct: 97  AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156

Query: 479 ARVFGAMXGAVDGGLKCSSFHQKIPXYDAESKKFNAE 589
           +RVFGAM GA DGGL       + P +D E+++ + E
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDE 193



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 25/43 (58%), Positives = 31/43 (72%)
 Frame = +1

Query: 10  MGFVKVVXNKQYFKRYQVKFKRRREGKTDYYARKRLACSGQEQ 138
           M F+K V +  YF RYQ K++RRREGKTDYYARKRL    + +
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  140 bits (340), Expect = 1e-34
 Identities = 68/157 (43%), Positives = 92/157 (58%)
 Frame = +2

Query: 119 LVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 298
           + Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S ELPRYG+K GL N+ 
Sbjct: 37  IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96

Query: 299 AXYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYLDVGLXRTTTG 478
           A Y+TG                              E +++GP  F  +LDVGL RT+TG
Sbjct: 97  AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156

Query: 479 ARVFGAMXGAVDGGLKCSSFHQKIPXYDAESKKFNAE 589
           +RVFGAM GA DGGL       + P +D E+++ + E
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDE 193



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 25/43 (58%), Positives = 31/43 (72%)
 Frame = +1

Query: 10  MGFVKVVXNKQYFKRYQVKFKRRREGKTDYYARKRLACSGQEQ 138
           M F+K V +  YF RYQ K++RRREGKTDYYARKRL    + +
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNK 43


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 336 CFKDLDLTPYTLAQXMSHVMN 398
           CF  LDL PYT  + + H ++
Sbjct: 735 CFNRLDLPPYTSKKDLDHKLS 755


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 537 NEEHLRPPSTAPFIAPKTRAPV 472
           +EE +  P+T+P + PK + P+
Sbjct: 306 DEEPVSEPTTSPILPPKNQEPI 327


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 341 EAVFVLIADQLNMXQHNLSDQPSHHNVATHV 249
           EAV + + D  +    +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 179 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 301
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,693
Number of Sequences: 5004
Number of extensions: 41207
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)