Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J16
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   1.9  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   4.3  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   5.7  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    24   7.6  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    24   7.6  

>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 266 DSPVKFLEQHNKIQIAP*GMELKHW 340
           DS  KFLE  NK+Q        KHW
Sbjct: 173 DSSEKFLELGNKVQTLGKAKNKKHW 197


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +2

Query: 140 GAPDRXETRRLMAEQYARDKKRFIXXFNFDIXSXCAYKAVKLDSPVKFLEQHNKIQ 307
           G PD    + L+    A    +F   F++D    C Y   K  S     E H++++
Sbjct: 202 GFPDLMTRKFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFKYGSNAYSHEPHSQLR 257


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 194 DKKRFIXXFNFDIXSXCAYKAVKLDSPVKFLEQH 295
           ++ R++  +N+ +   CA  AV  + P++ L+ H
Sbjct: 131 NENRYVNQYNYPVEPPCAKNAVYTEIPIE-LDPH 163


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 16   TWRLEDEHLNRGDSRYLAGMAALXNVSNTPRQA 114
            T + ++E  NRGD     G      V   PRQA
Sbjct: 1245 TKKKKEEETNRGDETSPEGTVGEDEVEEEPRQA 1277


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 383 DGDPKTLKSVFSTHANASVPFLTGLFEF 300
           DG   TL ++ + HA A +PF   L EF
Sbjct: 281 DGSVNTLITLATPHAMAPLPFDRHLVEF 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,136
Number of Sequences: 5004
Number of extensions: 25149
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)