Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J16
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.3  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    20   9.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 116 VACLGVLDTFXKAAIPARYLESPLFRCS 33
           ++CLG++ T   A +   + ++P+ R S
Sbjct: 522 ISCLGIVATMAVACLLFHHRDTPVVRAS 549


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 116 VACLGVLDTFXKAAIPARYLESPLFRCS 33
           ++CLG++ T   A +   + ++P+ R S
Sbjct: 612 ISCLGIVATMAVACLLFHHRDTPVVRAS 639


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 318 EEWN*SIGMCGKH 356
           E W  +IG CG H
Sbjct: 44  EGWFKAIGTCGSH 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,833
Number of Sequences: 438
Number of extensions: 1433
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)