Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_J15
(642 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 43 2e-06
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 25 0.47
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 1.9
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 1.9
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 1.9
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 1.9
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 4.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 4.4
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 7.7
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 43.2 bits (97), Expect = 2e-06
Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
Frame = +1
Query: 19 ERGKIAVETLKNEGLNPSYHQLDITNKKSVESFRDYIKTKYEGIDILINNAAIAFKQNAT 198
++ K VE LK++ Q D++N+ + ++++ IDILINNA I
Sbjct: 42 DKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQ 101
Query: 199 EPVAVQAEQTLYVNFFSLTSTCEILFPIVK----NGGRVINVSSSAGHLSRIPSENLRNK 366
+ ++ +N LT + + ++K N G ++N++ ++G L+ +P R
Sbjct: 102 NDEVLDWKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASG-LNLLPMNRNRPA 160
Query: 367 LKDPKLTLPELIALMQKYVDDAKQGIQ 447
K L L ++ + + I+
Sbjct: 161 YLASKCALTTLTDCLRSELAQCESNIK 187
Score = 29.1 bits (62), Expect = 0.038
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 469 SYAVSKVGVTALTKVQXRMLS--DRDIKVNAVHPGYVDTDMTS 591
+Y SK +T LT L+ + +IKV ++ P V+TDMT+
Sbjct: 160 AYLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTA 202
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 25.4 bits (53), Expect = 0.47
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -1
Query: 195 CVLFKCYGCIIYQNINSFIFGFYVIPKTFHAFLVCYIKLVVARV*AFVFQSFHCYF 28
CV+ + + IY + SF +V+ + ++ ++V+ A HCYF
Sbjct: 194 CVVCQNFFYQIYATLGSFYIPLFVMIQVYYKIFCAARRIVLEERRAQSHLEAHCYF 249
Score = 21.4 bits (43), Expect = 7.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 305 ITLPPFLTMGN 273
I+LPP L MGN
Sbjct: 172 ISLPPLLIMGN 182
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.4 bits (48), Expect = 1.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 154 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 291
IL+ ++ I F + NA P V T +NFF+ ++ P+V N
Sbjct: 313 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 359
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.4 bits (48), Expect = 1.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 154 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 291
IL+ ++ I F + NA P V T +NFF+ ++ P+V N
Sbjct: 282 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 328
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.4 bits (48), Expect = 1.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 154 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 291
IL+ ++ I F + NA P V T +NFF+ ++ P+V N
Sbjct: 333 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 379
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.4 bits (48), Expect = 1.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 154 ILINNAAIAF--KQNATEPVAVQAEQTLYVNFFSLTSTCEILFPIVKN 291
IL+ ++ I F + NA P V T +NFF+ ++ P+V N
Sbjct: 282 ILVTSSFITFWLEWNAV-PARVMIGVTTMLNFFTTSNGFRSTLPVVSN 328
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 22.2 bits (45), Expect = 4.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -1
Query: 60 AFVFQSFHCYFPTLF 16
+F Q FHCY P F
Sbjct: 421 SFFQQFFHCYCPVRF 435
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.2 bits (45), Expect = 4.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +1
Query: 535 RDIKVNAVHPGYVDTDMTSHKGV 603
RD+ V AV Y DTD+ +
Sbjct: 93 RDVNVRAVVAQYYDTDVNKEYAI 115
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.4 bits (43), Expect = 7.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -1
Query: 540 ISVRKHSXLNLGKSSDSYFRHSI*RITPLFSLNTLLRIIHILLH 409
++V K S +L +S+ +F H +++ L T+ H +LH
Sbjct: 900 VAVVKSSAQSLLQSNQQHFPHHQIQVSTSAGLQTIRLSGHSVLH 943
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.314 0.131 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,586
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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