Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J12
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    28   1.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   3.1  
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe...    25   7.2  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   9.5  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   9.5  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    25   9.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   9.5  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   9.5  

>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -3

Query: 650  VFSIFSKISYTPEAIRFSNFSRETLCLLIPKLFNHDVINFXWSLHKPPSAQIIPFPFIRP 471
            VF +  +I  + + I   N     L  +  K+      NF WSL   P    +P+  +RP
Sbjct: 1021 VFHLMQRIKQSYDVIEDGNNYIYVLSDMAQKILQVKSQNFGWSLTTYPKQIKLPYEILRP 1080


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 121  YSLLTIPN*YQLYLSSNMDLYFIWLVT 201
            +S+L+I N  +LYL+ N +   +W++T
Sbjct: 1457 FSILSITNSQRLYLAKNTEETEVWMLT 1483


>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 103 SLLHLAYSLLTIPN*YQLYLSSNMDLYFIWLVTFVAGFWIFKKIKEWQNLPP 258
           SLL+L +   +IP+   L   +++  YF+ +    +   I       QNLPP
Sbjct: 140 SLLYLFFQAESIPSLLLLIFFASLKFYFVLITLSYSNKLIVDSGIRPQNLPP 191


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 631 KFRILLKRFVFPIFLGKHCAYSFQNFSTTMLLIS 530
           KF   L +++  +FL  H  Y FQ+F  T   ++
Sbjct: 161 KFLCPLSKYLIYLFLSIHLFYVFQSFPWTYFCLA 194


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 150 STVSIK*YGPLFYLAGNVRGWVL 218
           S + +K +GP +YL+  + GW L
Sbjct: 99  SVLLVKKFGPHYYLSAMIIGWSL 121


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 490 GIICAEGGLWRDQXKLITSWLKSFGMSKHSVS 585
           GII +   + +D  + ++ WL++  +  HSVS
Sbjct: 9   GIIASTPPISKDSRRNVSHWLQALAVFLHSVS 40


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 184 FIWLVTFVAGFWIFKKIKEWQNLPPGPWGLPIVGYLPFIDRYHPHITLTNL 336
           F+WL     GFW+ + I   + LP   +  P++G LPF   Y   + LT L
Sbjct: 105 FVWLEVAWGGFWVSRVIA--RLLPYILY--PLMGILPF-TMYKYTVILTAL 150


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 489 WNYLCRRRFVEGPXEINNIV 548
           WNYLC      GP +++N++
Sbjct: 221 WNYLCGVLDKSGPSKLDNLI 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,693
Number of Sequences: 5004
Number of extensions: 65659
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)