Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_J09
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 234 9e-63
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 126 3e-30
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 121 8e-29
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 108 8e-25
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 87 2e-18
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 79 5e-16
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 45 8e-06
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 43 3e-05
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 36 0.004
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 35 0.012
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 30 0.33
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 28 1.0
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 28 1.0
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.1
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.1
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.1
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 4.1
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 26 4.1
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 4.1
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 5.4
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 5.4
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.5
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 234 bits (572), Expect = 9e-63
Identities = 109/144 (75%), Positives = 127/144 (88%)
Frame = +2
Query: 107 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 286
LT+EQIAEF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEVDADGNGTI
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 287 DFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDX 466
DF EFLTMMARKM DTD+EEE+REAF+VFDKDGNG+I+ EL HV+T+LGE+L+ EEV
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 467 MIREADIDGDGQVNYEEFVTMMTS 538
MIREAD DGDG +NYEEF +++S
Sbjct: 126 MIREADTDGDGVINYEEFSRVISS 149
Score = 70.1 bits (164), Expect = 3e-13
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +2
Query: 95 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 274
M D EE++ +EAF +FDKDG+G IT +EL V+ SLG+ ++ E+ DMI E D DG
Sbjct: 78 MKDTDNEEEV---REAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDG 134
Query: 275 NGTIDFPEFLTMMARK 322
+G I++ EF +++ K
Sbjct: 135 DGVINYEEFSRVISSK 150
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 126 bits (304), Expect = 3e-30
Identities = 64/138 (46%), Positives = 90/138 (65%)
Frame = +2
Query: 110 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 289
++EQ E KEAF L+D D DG I T +G+V+RSLG N T+AEL + NE+ ID
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAID 59
Query: 290 FPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDXM 469
+F++ ++ K+ +T+SEEE +AFRVFDKD +G+I A+ M LGEKL+D EV M
Sbjct: 60 EKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLM 119
Query: 470 IREADIDGDGQVNYEEFV 523
++EAD G +Y +FV
Sbjct: 120 VQEADPTNSGSFDYYDFV 137
Score = 52.4 bits (120), Expect = 5e-08
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 89 STMADQLTE-EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD 265
S ++++L E E E+ +AF +FDKD G I T + M++LG+ ++ E+Q M+ E D
Sbjct: 65 SFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEAD 124
Query: 266 ADGNGTIDFPEFLTMMARK 322
+G+ D+ +F+ + K
Sbjct: 125 PTNSGSFDYYDFVQRIMAK 143
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 121 bits (292), Expect = 8e-29
Identities = 57/143 (39%), Positives = 85/143 (59%)
Frame = +2
Query: 104 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 283
++TEEQ + EAF LFD D D I EL MR+LG N ++E+ ++ + D G G
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGY 89
Query: 284 IDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 463
+ +F+ +M K+ + D EEI+ AF +FD D G IS LR V L E + D+E++
Sbjct: 90 LQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELE 149
Query: 464 XMIREADIDGDGQVNYEEFVTMM 532
MI E D+D DG++N +EF+ +M
Sbjct: 150 AMIEEFDLDQDGEINEQEFIAIM 172
Score = 49.2 bits (112), Expect = 5e-07
Identities = 25/67 (37%), Positives = 37/67 (55%)
Frame = +2
Query: 335 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDXMIREADIDGDGQVNYE 514
+ ++I EAF++FD D + I ELR M LG EV ++R+ D G G + E
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQME 93
Query: 515 EFVTMMT 535
+FV +MT
Sbjct: 94 DFVRVMT 100
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 108 bits (259), Expect = 8e-25
Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Frame = +2
Query: 131 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM 310
+K+AFSLFD+ G G I +G ++R+ GQNPT AE+ ++ + + A+ +D +FL +
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAE----VDMEQFLQV 63
Query: 311 MARKMX-DTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDXMIREAD 484
+ R D + EE + F+VFDKD G I ELR+V+T+LGEKL++EE+D +++
Sbjct: 64 LNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 123
Query: 485 IDGDGQVNYEEFVTMM 532
+ DG VNY +FV M+
Sbjct: 124 VK-DGMVNYHDFVQMI 138
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +2
Query: 128 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 307
EF + F +FDKD G I EL V+ SLG+ + E+ +++ V +G +++ +F+
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQ 136
Query: 308 MM 313
M+
Sbjct: 137 MI 138
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 87.4 bits (207), Expect = 2e-18
Identities = 49/140 (35%), Positives = 77/140 (55%)
Frame = +2
Query: 104 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 283
QLT QI E KEAF+L DKDGDG I +++ T++ SL Q+ +E D IN + N
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASE----DSINHMFESINPP 96
Query: 284 IDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 463
I+ FLT M + ++ EAF FD +G I + +R ++++G+++ +EV+
Sbjct: 97 INLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVE 156
Query: 464 XMIREADIDGDGQVNYEEFV 523
++R G YE+FV
Sbjct: 157 SILR--SYTSHGVFYYEKFV 174
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 395 ISAAELRHVMTNLGEKLTDEEVDXMIREA----DIDGDGQVNYEEFVTMMTS 538
++A + + +LT ++ + +EA D DGDG + E+ TM+TS
Sbjct: 26 VAAQAAKRASSGAFAQLTSSQIQEL-KEAFALLDKDGDGNIGREDVKTMLTS 76
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 79.0 bits (186), Expect = 5e-16
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Frame = +2
Query: 110 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 289
+ E+I ++ F D + G+I E ++ S+ NP + L + VD DG G +D
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEFLSIP-SVASNPLASRL---FSVVDEDGGGDVD 74
Query: 290 FPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-----TNLGEKLTDE 454
F EF+ ++ + EE+++ AF+++D D +G+IS EL V+ TNL E +
Sbjct: 75 FQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQ 134
Query: 455 EVDXMIREADIDGDGQVNYEEF 520
VD I E D D DG++++EEF
Sbjct: 135 IVDKTIMEVDKDRDGKISFEEF 156
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 45.2 bits (102), Expect = 8e-06
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 335 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDXMIREADIDG-DGQVNY 511
+ +EE EAF +FD G+I +LR LGE LT E++ M+ D+ G +G+V+
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML---DLAGTNGKVSR 65
Query: 512 EEFVTM 529
EEF +
Sbjct: 66 EEFAEL 71
Score = 34.7 bits (76), Expect = 0.012
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +2
Query: 116 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 295
E E +EAF LFD G I ++L LG+N T+ +LQ M++ A NG +
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDL--AGTNGKVSRE 66
Query: 296 EF 301
EF
Sbjct: 67 EF 68
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 43.2 bits (97), Expect = 3e-05
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Frame = +2
Query: 248 MINEVDADGNGTIDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHV-- 421
+ N DAD NG IDF EF+ ++ + +++ AF+++D D NG IS E+ +
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIVD 126
Query: 422 ----MTNLGEKLTDEE------VDXMIREADIDGDGQVNYEEF 520
M KL ++E V+ + D + DGQ+ EEF
Sbjct: 127 AIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
Score = 31.9 bits (69), Expect = 0.083
Identities = 18/86 (20%), Positives = 39/86 (45%)
Frame = +2
Query: 275 NGTIDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 454
+G ++ EF + + D F VFD D NG+I E ++ ++
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND 99
Query: 455 EVDXMIREADIDGDGQVNYEEFVTMM 532
++ + D+D +G ++Y+E + ++
Sbjct: 100 KLIWAFQLYDLDNNGLISYDEMLRIV 125
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +2
Query: 239 LQDMINEVDADGNGTIDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAELRH 418
L D N++D DG G +D P T+ A + S +E+REA R + D +G + +
Sbjct: 21 LTDQFNKLDVDGKGYLDQP--TTIKAFEDSKKGSYDEVREAIREVNVDSSGRVEPEDFVG 78
Query: 419 VMTNLGEKLTDEEV 460
+ L + + EV
Sbjct: 79 IFNVLKKGVEGTEV 92
Score = 33.5 bits (73), Expect = 0.027
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 311 MARKMXDTDSEE--EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDXMIREAD 484
+ +K + +EE + + F D DG G++ + +K + +EV IRE +
Sbjct: 6 LQKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVN 64
Query: 485 IDGDGQVNYEEFV 523
+D G+V E+FV
Sbjct: 65 VDSSGRVEPEDFV 77
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +2
Query: 329 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDXMIREADIDGDGQVN 508
D + + E FR + + NG++S ++ V+ + KL+ ++++ + ADID DG +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 509 YEEFVTMM 532
++EF M
Sbjct: 59 FDEFAIAM 66
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 496 VAVDIGLANHXVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAE 362
V++ I L + L+ FLSE + +G+ DEA+ V+ ++AE
Sbjct: 180 VSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAE 224
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 496 VAVDIGLANHXVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEGLAD 350
V++ I L + ++ FL E + Q+G+ +EAV VL E AE D
Sbjct: 184 VSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAELFPD 232
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 101 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEV 262
D+ E A + +S+FD+D +G IT +E+ +G + A L+D+ + +
Sbjct: 538 DETGEVDNATLEACYSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSI 593
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 245 LEVRLLWGSVLATSSRCPALWS*WCHR 165
LE++ WGS+ A + +W+ W R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/85 (22%), Positives = 31/85 (36%)
Frame = +2
Query: 137 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 316
+ F FD+D DG + +EL + R P N + +G + + +L +
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFRHTPGLPEIWVSSQFPNSTVLNEHGYVTYNGWLAQWS 370
Query: 317 RKMXDTDSEEEIREAFRVFDKDGNG 391
A+ FD DG G
Sbjct: 371 MITLFDYKTTLAYLAYLGFDTDGRG 395
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/81 (20%), Positives = 34/81 (41%)
Frame = +2
Query: 233 AELQDMINEVDADGNGTIDFPEFLTMMARKMXDTDSEEEIREAFRVFDKDGNGFISAAEL 412
A +++ V + N ID E + K+ + ++ E V +DG+ I+ E
Sbjct: 318 ARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRNDLNNEEPNSVVAEDGSEIITLDEN 377
Query: 413 RHVMTNLGEKLTDEEVDXMIR 475
EKL D +++ ++
Sbjct: 378 DQSPNEATEKLRDNDLEESLK 398
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 371 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDXMIREAD 484
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 371 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDXMIREAD 484
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 173 TITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMXDTDSEEE 349
T + GT+ S+G + E + ++++ T DFPE L+ +++ EE
Sbjct: 545 TTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCH---TYDFPESLSHCVKRLPTPIPAEE 601
Query: 350 IREAFRVFDK 379
+++ + + DK
Sbjct: 602 LQKRYNLRDK 611
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 508 IDLAVAVDIGLANHXVDLLVSEFLSEVGHDVAQL 407
+D++V +D+ +H L S LS HDV Q+
Sbjct: 28 VDVSVDIDVIFPDHTQTLSFSLLLSNTIHDVRQV 61
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 251 INEVDADGNGTIDFPEFLTMMARKMXDTDSEEEIREAFRVFDK 379
I+E D + NG + F + + + D+ EE+ ++F + D+
Sbjct: 545 ISESDDESNGDMIRDSFDRLSSESIKDSQKTEELHDSFGINDE 587
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +2
Query: 230 EAELQDMINEVDADGNGTIDFPEFLT--MMARKMXDTDSEEEIREAFRVFDKDGNGFISA 403
E L+ +N + + N ++D P FL MM + + EIR A FD G F
Sbjct: 281 ETLLRYRLNLIMSFQNPSVD-PGFLCLLMMIFALGSMFAHMEIRSASNPFDNPGKQFFDT 339
Query: 404 AEL 412
A L
Sbjct: 340 ARL 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,907
Number of Sequences: 5004
Number of extensions: 35463
Number of successful extensions: 140
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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