Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J06
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    40   1e-04
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   1.9  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   4.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   4.4  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   5.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   7.6  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   7.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   7.6  

>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +1

Query: 103 LVDPQQSLREECSQKPDAQNMWAKYQECNDRVNSR---SKTAETCEEELIDYVHVLDKCV 273
           + DP + + +EC   PD + +   ++EC  RV  +      +E C EE     H    C 
Sbjct: 146 ITDPLEKMTQECMDAPDCKEVKHHFEECTARVTKKVEQGDKSEDCIEEFFHLYHCARDCA 205

Query: 274 TKDLFKRL 297
              +FK L
Sbjct: 206 DPKVFKVL 213


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 291 LKQVLGDAFVKNMDIVNEFFFTGFCSFRS 205
           +KQ L D+F  N +  N FF + + SF S
Sbjct: 468 IKQALNDSFDGNEEKKNAFFLSSYKSFAS 496


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 240 EFFFTGFCSFRSGVY 196
           +FF T FC FRSG +
Sbjct: 231 QFFHTAFCLFRSGSF 245


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 466  FFFLTGNYLYLQINSNNIGDSHILYINKFTKXTGPLKLRMR 344
            ++FL+ + + +QIN NN+    +L +      T  L +R++
Sbjct: 1187 YYFLSLSEMLIQINPNNLSKPKLLPLCLVNLSTNNLSVRLK 1227


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 115 QQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYV 252
           Q++ +EE   + D +N  AKY+E  +    R    +  E + ++ V
Sbjct: 158 QKAKKEESKLEEDLRNARAKYEESLEEFEDRMVQLKELEPDRVENV 203


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 270 AFVKNMDIVNEFFFTGFCSFRSGVYTII 187
           A +KN D VN  ++       SGV TI+
Sbjct: 51  AVIKNFDEVNRMYYIQVVGNLSGVITIV 78


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 341 KPHP*F*WACXFSKFIYVQNVRITNVVTV 427
           +PHP F +    S++IY+  + +  + T+
Sbjct: 550 EPHPSFEYVSRLSQYIYLLRIALVRLYTI 578


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 103 LVDPQQSLREE-CSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDYVHVLDK 267
           L +  +SL+E+  S+K + QN+ ++   CN ++   +   +  + E +    V DK
Sbjct: 742 LDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDK 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,772
Number of Sequences: 5004
Number of extensions: 26990
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)