Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J06
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 199 LHDHCTLDI*PTCFGHQ 149
           L  HC  DI PT   HQ
Sbjct: 243 LEAHCYFDIEPTVQQHQ 259


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/46 (17%), Positives = 23/46 (50%)
 Frame = +1

Query: 112  PQQSLREECSQKPDAQNMWAKYQECNDRVNSRSKTAETCEEELIDY 249
            PQQ  +++  Q+P  Q+   + Q+   +   + +  +  +++  +Y
Sbjct: 1505 PQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEY 1550


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 136 CSQKPDAQNMWAKYQECNDRVNS 204
           C  +P     WA Y++C+  V++
Sbjct: 106 CLLQPYPDWSWANYKDCSGIVSA 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,342
Number of Sequences: 438
Number of extensions: 1794
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)