Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J04
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...   106   3e-24
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...    40   4e-04
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   2.4  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   4.1  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   4.1  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.5  

>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score =  106 bits (254), Expect = 3e-24
 Identities = 47/91 (51%), Positives = 60/91 (65%)
 Frame = +1

Query: 217 WEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIP 396
           W H AGPKT+ FWAPA KW LV++G+GD  R  E LSI Q A+L ATG IW+R+SL++ P
Sbjct: 10  WNHPAGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRP 69

Query: 397 KNYSLFAVNVFVXLTSLYQIGRAFKYQQALK 489
           KNY    VN F+ +    Q+ R   YQ+  K
Sbjct: 70  KNYFNATVNFFLAIVGAVQVSRILVYQRQQK 100


>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 250 FWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSLFAVNVF 429
           FW P   +G+ IA + DL +    +S   + +L     ++ RY+ ++ P+NY L   + F
Sbjct: 37  FWGPLSNFGIPIAAILDLKKDPRLISGRMTGALILYSSVFMRYAWMVSPRNYLLLGCHAF 96


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 142 LKCPAIYRVLVTSADKFVPSKLRPLWEHEAG--PKTIFFWAPAFKWGLVIAGLG 297
           L+ PA++ ++ T    F  ++++ L+   A   P  I+ W   F W + I  +G
Sbjct: 193 LQTPALWEIVETMITLFQFAQIQALYSMMATSLPAIIYSWGRNFMWSMGIIRIG 246


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 355 TGIIWSRYSLVIIPKNYSLFAVNVF 429
           TGI+WS Y++      Y+ FA + F
Sbjct: 657 TGILWSNYAIYDPKTAYNTFAASTF 681


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 16  YQLNNSTVLARPI*KGHVIEHYLANPTDPSLSNFPSLVQNYTLKCPAIYRVLVTSADKFV 195
           Y  +N TV ++   K  + + Y+  P D   S   SL+ +YT K     + L T  D+F 
Sbjct: 328 YGSSNRTVQSQ---KRSIRDKYIQMPND---STQASLMPSYTRKTSNASKKLTTEEDEFY 381

Query: 196 PSKLRP 213
            S+  P
Sbjct: 382 DSEEEP 387


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +1

Query: 343  SLAATG---IIWSRYSLVIIPKNYSL 411
            SL ++G   I+W   S++  PKNYSL
Sbjct: 1262 SLCSSGYESIVWDLTSILFDPKNYSL 1287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,026
Number of Sequences: 5004
Number of extensions: 48789
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)