Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_J04
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0848 + 21992610-21992724,21993009-21993137,21993625-219937... 103 1e-22
07_03_0223 - 15368631-15368682,15368765-15368838,15369312-153693... 101 4e-22
08_02_0303 + 15566152-15566209,15566265-15566363,15566465-155665... 97 8e-21
09_03_0104 - 12389907-12389943,12390086-12390203,12390339-123903... 61 7e-10
08_02_0653 - 19729325-19729378,19730137-19730174,19730391-197304... 50 1e-06
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 29 3.2
02_04_0304 + 21860661-21860784,21861435-21862044,21862557-218627... 27 9.9
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 27 9.9
>07_03_0848 +
21992610-21992724,21993009-21993137,21993625-21993723,
21993833-21993885,21994157-21994230,21994382-21994433
Length = 173
Score = 103 bits (247), Expect = 1e-22
Identities = 42/92 (45%), Positives = 62/92 (67%)
Frame = +1
Query: 199 SKLRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRY 378
SKL+ W H AGPKTI FWAP FKWG+ IA + D +P E +S PQ +A +G+IW+R+
Sbjct: 67 SKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEMISYPQQVVVACSGVIWARW 126
Query: 379 SLVIIPKNYSLFAVNVFVXLTSLYQIGRAFKY 474
+VI P N++L +VN + +T + Q+ R ++
Sbjct: 127 GMVITPINWNLSSVNAAMAVTGVCQLSRKIRH 158
>07_03_0223 -
15368631-15368682,15368765-15368838,15369312-15369364,
15369486-15369584,15370655-15370715,15372741-15372830
Length = 142
Score = 101 bits (243), Expect = 4e-22
Identities = 44/86 (51%), Positives = 60/86 (69%)
Frame = +1
Query: 214 LWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVII 393
L+ + G TI FWAP FKWG+ IA + D +P E +S PQ ++A TG+IWSRYS+VI
Sbjct: 41 LYGIKTGHHTIHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVIT 100
Query: 394 PKNYSLFAVNVFVXLTSLYQIGRAFK 471
PKN++LF+VNV + T LYQ+ R +
Sbjct: 101 PKNWNLFSVNVAMAGTGLYQLSRKIR 126
>08_02_0303 +
15566152-15566209,15566265-15566363,15566465-15566517,
15566695-15566768,15566858-15566909
Length = 111
Score = 97.5 bits (232), Expect = 8e-21
Identities = 40/76 (52%), Positives = 55/76 (72%)
Frame = +1
Query: 244 IFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSLFAVN 423
+ FWAP FKWG+ IA + D +P E +S PQ ++A TG+IWSRYS+VI PKN++LF+VN
Sbjct: 20 VHFWAPTFKWGISIANVADFAKPPEKISYPQQVAVACTGVIWSRYSMVITPKNWNLFSVN 79
Query: 424 VFVXLTSLYQIGRAFK 471
V + T LYQ+ R +
Sbjct: 80 VAMAGTGLYQLSRKIR 95
>09_03_0104 -
12389907-12389943,12390086-12390203,12390339-12390393,
12391607-12391702
Length = 101
Score = 61.3 bits (142), Expect = 7e-10
Identities = 32/88 (36%), Positives = 48/88 (54%)
Frame = +1
Query: 232 GPKTIFFWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSL 411
GPKT FW P WG V+AGL D+N+P E +S +A L + R++ ++ P+NY L
Sbjct: 14 GPKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAGL------FMRFAWMVQPRNYLL 67
Query: 412 FAVNVFVXLTSLYQIGRAFKYQQALKNE 495
A + LYQ+ R + Q L+ +
Sbjct: 68 LACHASNESVQLYQMSRWARAQGYLEKK 95
>08_02_0653 -
19729325-19729378,19730137-19730174,19730391-19730445,
19731401-19731496
Length = 80
Score = 50.4 bits (115), Expect = 1e-06
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 208 RPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETLS 327
+ W GP+T FW P WG V+AGL D+N+P E +S
Sbjct: 6 KAFWNSPVGPRTTHFWGPVANWGFVLAGLVDMNKPPEMIS 45
>01_01_1096 -
8659091-8659459,8660730-8661050,8661416-8661694,
8661781-8661897,8662142-8662210,8663204-8663397,
8663552-8663633
Length = 476
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 299 SPKPAITKPHLKAGAQKNIVLGPA-SCSHSGRS 204
SP PA P + GAQ+N+ GP H G S
Sbjct: 244 SPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSS 276
>02_04_0304 +
21860661-21860784,21861435-21862044,21862557-21862771,
21863072-21863192,21863660-21863772,21863877-21864106,
21864428-21864543,21864675-21864773,21865394-21865639,
21866091-21866190,21866280-21866486,21866584-21866805
Length = 800
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 127 LSWGSWIRKDRWDLLNNVQLHDLFRLAVLR 38
LS W+ RW + NN+Q H + +VLR
Sbjct: 533 LSRLEWLSLKRWYIRNNLQAHGVTEQSVLR 562
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 529 LXNLHIYFRKIDLSESTQHSTVNHNSTKIIXQLNIA 636
+ +HI R ID E+ Q V+ + K+I NIA
Sbjct: 537 MFKVHILHRSIDTDEALQTMKVSKSCRKVILATNIA 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,517,749
Number of Sequences: 37544
Number of extensions: 291765
Number of successful extensions: 615
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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