Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J04
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical pr...   119   2e-27
Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical pr...    49   3e-06
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical
           protein F53F10.3 protein.
          Length = 133

 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 4/111 (3%)
 Frame = +1

Query: 157 IYRVLVTSADKFV----PSKLRPLWEHEAGPKTIFFWAPAFKWGLVIAGLGDLNRPVETL 324
           +Y+ L  + DKFV    P+  +P W H AGPKT+FFWAP  KW L+ AGL DL RP + L
Sbjct: 7   LYQALCKAGDKFVYPVLPAFAKPAWNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKL 66

Query: 325 SIPQSASLAATGIIWSRYSLVIIPKNYSLFAVNVFVXLTSLYQIGRAFKYQ 477
           S+ Q+++L ATG IW+RY LVI P NY L +VN FV  T L Q+ R   Y+
Sbjct: 67  SLYQNSALFATGAIWTRYCLVITPINYYLSSVNFFVMCTGLAQLCRIAHYR 117


>Z32683-8|CAA83622.1|  160|Caenorhabditis elegans Hypothetical
           protein R07E5.13 protein.
          Length = 160

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +1

Query: 250 FWAPAFKWGLVIAGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVIIPKNYSLFAVNVF 429
           FW P   WGL +A LGDL +  + +S P +++L     ++ R++  + P+N  LFA +  
Sbjct: 29  FWGPVANWGLPLAALGDLKKNPDMISGPMTSALLIYSSVFMRFAWHVQPRNLLLFACHFA 88

Query: 430 VXLTSLYQIGR 462
                  Q+GR
Sbjct: 89  NFSAQGAQLGR 99


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
 Frame = -3

Query: 363 NASCSQ*CG--------LRYREGLNRPI--QVTQTCYHQAP 271
           +ASC Q CG        L      N P   Q TQ CYHQAP
Sbjct: 806 DASCQQLCGTAPTPAVPLTVNYNCNLPCDQQCTQQCYHQAP 846


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,214
Number of Sequences: 27780
Number of extensions: 261772
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)