Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_J04
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.48 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.6  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   7.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 265 FKWGLVI-AGLGDLNRPVETLSIPQSASLAATGIIWSRYSLVII 393
           F WG+++ +G+G+          P+S S    G++W+ ++++I+
Sbjct: 616 FAWGVLLNSGIGE--------GTPRSFSARVLGMVWAGFAMIIV 651


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 155 LYTEFWSHQQTNLSHRNSARYGNTKLDLKR 244
           +Y  F   +QT++SH N+    N   D KR
Sbjct: 857 MYKPFLIPEQTSISHENNQPTMNKCSDRKR 886


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 375 PRPDNASCSQ*CGLRYREGLNRPIQVTQ 292
           PRP +    +   L    G NRP+ ++Q
Sbjct: 80  PRPPHPRLRREAELEAEPGNNRPVYISQ 107



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 375 PRPDNASCSQ*CGLRYREGLNRPIQVTQ 292
           PRP +    +   L    G NRP+ ++Q
Sbjct: 136 PRPPHPRLRREAELEAEPGNNRPVYISQ 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,535
Number of Sequences: 438
Number of extensions: 3435
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)