Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_I23
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 263 1e-71
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 263 2e-71
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 29 0.58
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 1.3
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 28 1.3
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 27 2.3
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.1
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 27 3.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.1
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 4.1
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 4.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.2
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 7.2
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 25 9.5
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 263 bits (645), Expect = 1e-71
Identities = 120/175 (68%), Positives = 142/175 (81%)
Frame = +2
Query: 113 AVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSXALEAGRICCNKYLVKNCGKDQ 292
AVPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++S ALEA RIC NKYLVK GKD
Sbjct: 25 AVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDS 84
Query: 293 FHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRW 472
FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D
Sbjct: 85 FHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSS 144
Query: 473 KAQVIEALRRAKFKFPGRQKIYVSXKWGFTXYERDEFDKLREEGRLANDGCIVQY 637
+A IEALRR ++KFPG+Q+I VS KWGF+ Y RDE+ + R G + DGC ++
Sbjct: 145 RATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 40 MGRRPARCYRYCKNKPYPKSRFCR 111
M RRPARCYRYCKNKPYPKSR+ R
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNR 24
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 263 bits (644), Expect = 2e-71
Identities = 120/175 (68%), Positives = 142/175 (81%)
Frame = +2
Query: 113 AVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSXALEAGRICCNKYLVKNCGKDQ 292
AVPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++S ALEA RIC NKYLVK GKD
Sbjct: 25 AVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDS 84
Query: 293 FHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRW 472
FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D
Sbjct: 85 FHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSS 144
Query: 473 KAQVIEALRRAKFKFPGRQKIYVSXKWGFTXYERDEFDKLREEGRLANDGCIVQY 637
+A IEALRR ++KFPG+Q+I VS KWGF+ Y RDE+ + R G + DGC ++
Sbjct: 145 RATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +1
Query: 40 MGRRPARCYRYCKNKPYPKSRFCR 111
M RRPARCYRYCKNKPYPKSR+ R
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNR 24
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 29.1 bits (62), Expect = 0.58
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 101 GSVGAVPDPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSXALEA 241
G++ + DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 313 GALISPKDPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Frame = +2
Query: 311 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 478
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 479 QVIEALRRAKFKFPGRQKIYV 541
AL++A F PG+ +I V
Sbjct: 159 LAEHALKQAAFHLPGKYEIIV 179
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -1
Query: 221 SAVHIRRTP---SARTVESRQRSLSSYPNRRYGSWDQVQPRQNLDFGYGLFLQYR*HLAG 51
S VH TP SAR ES ++ L+ P+ S P + G F Q HLA
Sbjct: 898 SKVHTLETPKVISARPAESVKQPLTPVPSMTSQSAQSYIPPRRQQQQKGFFAQINDHLAQ 957
Query: 50 RRPMV 36
R M+
Sbjct: 958 RGNML 962
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 453 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQXSGVSQXMNVMSLTSCVKRAAS 611
C L+T C + + SP+++RS Y +G++ + +T RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 128 KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSXALEAG 244
KI + +KRA +D LC+ +S + E ++ +LE+G
Sbjct: 56 KISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 174 SSTVALFLPKSKIRILGSGTAPTEPRFRIRFIFAVPVASC 55
S TV + PK+ + SGT T F + +P A C
Sbjct: 150 SGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIPTAIC 189
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 174 SSTVALFLPKSKIRILGSGTAPTEPRFRIRFIFAVPVASC 55
S TV + PK+ + SGT T F + +P A C
Sbjct: 150 SGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIPTAIC 189
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 156 RERPLTTFHCACTWCPTNMNS 218
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 483 SSRLCAVPSSSSPDVKRSTYQXSGVS 560
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 96 IEVLSGLYLIPRSVSSIWVR---RERPLTTFHCA 188
I VL+ + L+P SV++ WV+ +E P FH +
Sbjct: 251 ILVLNKVDLVPTSVAAAWVKILAKEYPTIAFHAS 284
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 415 STLRLAKRTTHPSLEPISSS 356
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 241 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 125
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 284 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 388
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 143 DLGKKRATVDDFPLCVHLVSDEYEQL 220
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 53 QQDATGTAKINRIRNRGSVGAVPDPKIRIFDLGKKRATVD 172
Q+ + +++ N S + PD K+R+FD RA ++
Sbjct: 235 QKSVPTSLEVSHFENFWSTISYPDCKVRVFDTKSGRAILE 274
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 53 QQDATGTAKINRIRNRGSVGAVP-DPKIR 136
QQ+ T K +RIRN G VP P+IR
Sbjct: 212 QQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,129
Number of Sequences: 5004
Number of extensions: 60168
Number of successful extensions: 196
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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