Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_I23
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 256 1e-68
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 254 3e-68
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 246 1e-65
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.1
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 4.2
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.6
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593 28 7.4
09_06_0319 - 22293869-22293906,22294539-22295808 27 9.8
08_02_0567 + 18769742-18769790,18769928-18771351 27 9.8
06_02_0084 - 11547820-11548773 27 9.8
02_03_0106 + 15292869-15296138 27 9.8
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 256 bits (626), Expect = 1e-68
Identities = 118/178 (66%), Positives = 139/178 (78%)
Frame = +2
Query: 116 VPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSXALEAGRICCNKYLVKNCGKDQF 295
VPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SS ALEA RI CNKY+ K+ GKD F
Sbjct: 333 VPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAF 392
Query: 296 HIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWK 475
H+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR D
Sbjct: 393 HLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANA 452
Query: 476 AQVIEALRRAKFKFPGRQKIYVSXKWGFTXYERDEFDKLREEGRLANDGCIVQYRPEH 649
A EALRRAKFKFPGRQ++ S KWGFT ++RDE+ KL+ EGR+ DG + H
Sbjct: 453 AHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRH 510
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = +1
Query: 52 PARCYRYCKNKPYPKSRFCRGCT*SQDPYLR 144
P RCYR KNKPYPKSR+CRG DP +R
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGV---PDPKIR 339
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 254 bits (623), Expect = 3e-68
Identities = 119/178 (66%), Positives = 138/178 (77%)
Frame = +2
Query: 116 VPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSXALEAGRICCNKYLVKNCGKDQF 295
VPDPKIRI+D+G K+ VD+FP CVHLVS E E +SS ALEA RI CNKY+ KN GKD F
Sbjct: 26 VPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAF 85
Query: 296 HIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWK 475
H+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR +
Sbjct: 86 HLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNA 145
Query: 476 AQVIEALRRAKFKFPGRQKIYVSXKWGFTXYERDEFDKLREEGRLANDGCIVQYRPEH 649
EALRRAKFKFPGRQKI S KWGFT + R+E+ KL+ EGR+ +DG Q H
Sbjct: 146 KHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSH 203
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +1
Query: 40 MGRRPARCYRYCKNKPYPKSRFCRGCT*SQDPYLR 144
MGRRPARCYR KNKPYPKSR+CRG DP +R
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGV---PDPKIR 32
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 246 bits (602), Expect = 1e-65
Identities = 114/169 (67%), Positives = 133/169 (78%)
Frame = +2
Query: 116 VPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSXALEAGRICCNKYLVKNCGKDQF 295
VPDPKIRI+D+G K+ VD+F CVHLVS E E ++S ALEA RI CNKY+ K+ GKD F
Sbjct: 22 VPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAF 81
Query: 296 HIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWK 475
H+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 82 HLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNA 141
Query: 476 AQVIEALRRAKFKFPGRQKIYVSXKWGFTXYERDEFDKLREEGRLANDG 622
EALRRAKFKFPGRQKI S KWGFT + RDE+ +L+ EGR+ DG
Sbjct: 142 VHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = +1
Query: 61 CYRYCKNKPYPKSRFCRGCT*SQDPYLR 144
CYR KNKPYPKSR+CRG DP +R
Sbjct: 4 CYRQIKNKPYPKSRYCRGV---PDPKIR 28
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -3
Query: 444 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 352
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 164 TVDDFPLC-VHLVSDEYEQLSSXALEAGRICCNKYLVKNCG 283
T D P C +HL SD Y S ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 398 GKPQGTVARVRIGQPIMSVRSSD 466
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
Length = 1278
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 59 DATGTAKINRIRNRGSVGAVPD-----PKIRIFDLGKKRATVDDF 178
D +G + R+ N VGA+P PK+ FDLG T +DF
Sbjct: 138 DLSGLVDL-RLYNNNLVGAIPHQLSRLPKVAHFDLGANYLTDEDF 181
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 398 GKPQGTVARVRIGQPIMSVRSSD 466
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 383 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 535
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 347 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 475
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -3
Query: 309 LMRIWN*SFPQFFTRYLLQQIRPASKAXELSCSYSSDTKCTHSGKSSTVALFLPKSKI 136
L+ W+ +FP++ LL + R EL CS S C GK+ ++ +P+ +I
Sbjct: 1008 LIIFWSIAFPRWLE--LLIRKRDGLCHFELQCSLSLLRSCLDGGKNWSIVQQIPEVRI 1063
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,156,892
Number of Sequences: 37544
Number of extensions: 457937
Number of successful extensions: 1262
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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