Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_I21
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    31   0.19 
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.1  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   4.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   5.5  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   9.5  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   9.5  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   9.5  

>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
 Frame = +3

Query: 123 SLAKATSQKSTPEDSQ-YVAAVVEFIMSDDVEDNIRNYIHYIEEAAKQHADIIVFPELCL 299
           ++   ++    P+D + +   +V+   + D  +N++     + EAAK  +++IV PE+  
Sbjct: 27  NIMSVSASSLVPKDFRAFRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFN 86

Query: 300 TNKTTAFVVPVYGSLKRYPIPAIHPDLYDNILVSISAAARSNQIYVVVNGRELMDCTXND 479
           +   T      Y +    PI    P        ++S+ A+  + Y+              
Sbjct: 87  SPYGTG-----YFNQYAEPIEESSPSYQ-----ALSSMAKDTKTYLF------------- 123

Query: 480 TGEPCPELKE-YIFNTNVVFNXNGAIIDRYRKINLF 584
            G   PE K+  ++NT +VF+ +G +I  +RKI+LF
Sbjct: 124 -GGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLF 158


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 567 RKINLFREYSHTPALSPRLGAISTQ 641
           R+I LF E  H P+L PR    ++Q
Sbjct: 53  RRIPLFHESFHLPSLDPRASTTTSQ 77


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 324  VPVYGSLKRYPIPAIHPDLYDN-ILVSISAAARSNQIYVVVNGREL 458
            VP +GS K    PA+   LYD  +LVSIS   +  ++Y+ ++  E+
Sbjct: 1388 VPRFGSFK---YPALK--LYDRGVLVSISHMPQKEKLYITISADEV 1428


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 342 LKRYPIPAIHPDLYDNILVS---ISAAARSNQIYVVVNGRELMDCTXNDTGE 488
           +  +  P ++  L  NI +S        + N I +V +GR+LM C    +G+
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGK 219


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 321 VVPVYGSLKRYPIPAIHPDLYDNILVSI 404
           ++P++ S KR+     +P L+DN  V I
Sbjct: 139 IIPIFKSKKRFMTSHNNPSLHDNFSVRI 166


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 309 TTAFVVPVYGSLKRYPIPAIHPDLYDNILV 398
           T+   +PV   L +Y +  I PDLYD + V
Sbjct: 231 TSLLQIPV-SQLSQYSVIFIVPDLYDRVYV 259


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -2

Query: 578 VDLAISINNRPVXIKHHVCVKDILL----QLRTRFAGV 477
           +DLA+S  N+ + ++  VC++D ++    Q R RFA +
Sbjct: 366 MDLAVSYVNQSLNVQALVCLEDWIVNSFPQYRNRFAKI 403


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 210 VEDNIRNYIHYIEE--AAKQHADIIVFPELCLT 302
           V +NI +    +++   A Q   ++VFPE+CLT
Sbjct: 15  VNENIVHLRQLLDQHSEALQSVKLLVFPEMCLT 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,181
Number of Sequences: 5004
Number of extensions: 48813
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)