Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_I21
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1048 + 10624027-10624575,10625332-10625522,10626044-106265... 33 0.20
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 32 0.35
07_03_0256 - 15875066-15877025,15877292-15877911 31 1.1
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 28 5.6
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 28 5.6
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 28 7.5
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 28 7.5
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 27 9.9
04_04_0502 - 25686982-25688361 27 9.9
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999... 27 9.9
>08_01_1048 +
10624027-10624575,10625332-10625522,10626044-10626539,
10626664-10626749,10626853-10627033
Length = 500
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 330 VYGSLKRYPIPAIHPDLYDNILVSISAAARSNQIYVVVNGRELMDCTXNDTGEPCPELKE 509
VY ++ +P+ + D Y ++V + A+AR Q+Y + D D + PE E
Sbjct: 117 VYENVLFFPVVQLLRDRYPGVVVDVVASARGKQVYEMCKNVRYAD--VYDPDDDWPEPAE 174
Query: 510 YIFNTNVVFN 539
Y V+ N
Sbjct: 175 YTHQLGVLKN 184
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 323 CTSLWLTEAIS----YTGDTPRFV*QYFSVNIGGCKK*SNLRCGQWPR 454
C+ W + +S YT P V YF +++GG + S+ RCG R
Sbjct: 480 CSDDWTAKTVSVMTFYTNPIPSVVQSYFILSLGGVTRTSHKRCGNQSR 527
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 420 SNQIYVVVNGRELMDCTXNDTGEPCPELKEYI--FNTNVVFNXNGAIIDRYRKINLFREY 593
+NQ+Y+ V + DC+ T P++K + F ++V GA+ D + IN REY
Sbjct: 145 ANQVYLEVKNQ--FDCSAFVTVSQNPDVKHVLAKFLSDVSGAIGGALADEHHLINKLREY 202
>10_07_0091 -
12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 450 RELMDCTXNDTGEPCPELKEYIFNTNVVFNXNG 548
R+LMD + + T E CP ++ I ++ V + NG
Sbjct: 596 RKLMDDSLSQTAEACPLIENLILSSCVSIDLNG 628
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 300 TNKTTAFVVPVYGSLKRYPIPAIHPDLYDNILVSISAAAR-SNQIYVV 440
+ KT AFVVPV L+R P P P ++ + + IS S+QIY V
Sbjct: 71 SGKTLAFVVPVVEILRRRPSP---PKPHEVLGIIISPTRELSSQIYNV 115
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 363 AIHPDLYDNILVSISAAARSNQIYVVVNGRELM 461
A+ P +N+ VSI AA S+ ++NG E+M
Sbjct: 354 AVVPTAGENLTVSIGRAASSDSKKAILNGLEIM 386
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 159 EDSQYVAAVVEFIMSDDVEDNIRNYIHYIEEAAKQHADIIV 281
ED+ V V+E ++ D I HY E+AA Q A +IV
Sbjct: 182 EDAVAVQLVMELCAGGELFDRIIQRGHYSEKAAAQLARVIV 222
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 516 FNTNVVFNXNGAIIDRYRKINLF 584
+NT+V+ + +G I YRKI+LF
Sbjct: 176 YNTHVLIDDSGEIRSSYRKIHLF 198
>04_04_0502 - 25686982-25688361
Length = 459
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 439 WSMAESSWTVLXMTPANLVRS*RSISLTQTWCLIXTGR 552
WS S + + P N++ S I Q+WC +GR
Sbjct: 368 WSRMPSHVPNIRVIPGNVIMSVTVIVYDQSWCFTQSGR 405
>04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,
9992466-9992555,9992692-9992782,9993530-9993729,
9998024-9998101,9998196-9998312,10000017-10000112,
10000192-10000317,10000533-10000629,10000979-10001023,
10002106-10002179,10002267-10002350,10002439-10002522,
10002660-10002851,10003775-10003903,10004061-10004093,
10004190-10004286,10004833-10004883,10005211-10005289,
10005480-10005552,10005595-10005691,10006392-10006473,
10008345-10008691,10010271-10010535,10010624-10010743,
10010971-10011358
Length = 1219
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 123 SLAKATSQKSTPEDSQYVAAVVEFIMSDDVEDNIRNYIH----YIEEAAKQHADIIV 281
S+ K + ++ DS A ++++ ++D +R +H YI++ A + ++V
Sbjct: 1047 SMEKTSEEELVVPDSMDAAGEEVLVVTNSMDDEVREEVHVTVDYIDDEASEEGHVVV 1103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,924,924
Number of Sequences: 37544
Number of extensions: 304282
Number of successful extensions: 666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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