Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_I21
         (654 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.68 
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    24   4.8  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 162  DSQYVAAVVEFIMSDDVEDNIRNYIHYIEEAAKQHADIIV----FPELCLTNKTTAFVVP 329
            D+  +  V  +I       N++  +  ++E    HAD+++    +P  CL ++T  F + 
Sbjct: 1163 DNTNIGKVASYIREKTT--NLQTIVISLKEEFYCHADVLIGICPYPAECLVSQTLIFDLE 1220

Query: 330  VYGSLKR 350
             YG  ++
Sbjct: 1221 KYGDYRQ 1227


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 429 IYVVVNGRELMDCTXNDTGE 488
           I +++NGR+LM C    +G+
Sbjct: 205 IPIILNGRDLMACAQTGSGK 224


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,058
Number of Sequences: 2352
Number of extensions: 11041
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)