Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_I21
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    29   2.2  
X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.        28   5.0  
AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical ...    28   5.0  
U40945-8|AAM54201.1|  170|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U40945-7|AAS80345.1|  196|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 342  LKRYPIPAIHPDLYDNILVSISAAARSNQIYVVVNGRELMDCTXN 476
            +++Y   ++H D+    ++ + A A+++ +YVV    E+  C  N
Sbjct: 2008 IQKYRAHSLHSDIGKKRILKLVADAKNDLVYVVTRQNEVWKCATN 2052


>X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = +3

Query: 123 SLAKATSQKSTPE--DSQYVAAVVEFIMSDDVEDNI---RNYIHYIEEAAKQHADIIVFP 287
           +L   T  +S P+  + +   A  E I+ D ++  I   RN +H  E  + Q AD+++  
Sbjct: 307 NLPYITMDQSGPKHLNLKLTRAKFEQIVGDLIKRTIEPCRNVLHDAEVKSSQIADVLLVG 366

Query: 288 ELCLTNKTTAFVVPVYGSLKRYPIPAIHPD 377
            +    K  A V  ++G   + P  A++PD
Sbjct: 367 GMSRMPKVQATVQEIFG---KVPSKAVNPD 393


>AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical
           protein C17A2.2 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 400 QYRRLQEVIKSTLWSMAESSWTVLXMTPANLV 495
           ++R + EV+   +WS   S WT+       LV
Sbjct: 234 RHRHINEVVDCNIWSRGHSKWTIFADLDERLV 265


>U40945-8|AAM54201.1|  170|Caenorhabditis elegans Hypothetical
           protein F10D7.5e protein.
          Length = 170

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 611 QSGRVRIFPEKVDLAISINNRPVXIKHHVCVKDILLQLRTRFAGVI 474
           ++GR+    E     ++ +NRP+ I  +VC++  L ++ T ++GV+
Sbjct: 53  KNGRLAKRRESFCKGLAFSNRPIEIDENVCLR--LCEVGTNWSGVL 96


>U40945-7|AAS80345.1|  196|Caenorhabditis elegans Hypothetical
           protein F10D7.5b protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 611 QSGRVRIFPEKVDLAISINNRPVXIKHHVCVKDILLQLRTRFAGVI 474
           ++GR+    E     ++ +NRP+ I  +VC++  L ++ T ++GV+
Sbjct: 53  KNGRLAKRRESFCKGLAFSNRPIEIDENVCLR--LCEVGTNWSGVL 96


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 611 QSGRVRIFPEKVDLAISINNRPVXIKHHVCVKDILLQLRTRFAGVI 474
           ++GR+    E     ++ +NRP+ I  +VC++  L ++ T ++GV+
Sbjct: 53  KNGRLAKRRESFCKGLAFSNRPIEIDENVCLR--LCEVGTNWSGVL 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,923,380
Number of Sequences: 27780
Number of extensions: 271671
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)