Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_I17
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 32 0.070
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.21
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 30 0.28
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.50
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.50
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 28 1.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.0
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 2.0
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 6.1
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 8.1
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 31.9 bits (69), Expect = 0.070
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +2
Query: 158 IIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVXFEYLEXLMKA 295
+ + D+ F + + ++RLV+D T++ +GF YV FE + L A
Sbjct: 105 LTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADTLSAA 149
Score = 31.1 bits (67), Expect = 0.12
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +1
Query: 103 PLPSEPPYKAYVGNL 147
P+PSEPP+ A+VGNL
Sbjct: 87 PIPSEPPFTAHVGNL 101
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 30.3 bits (65), Expect = 0.21
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 152 PAIIQGDINRIFPDLS-IKNVRLVMDKETDKFKGFCYVXFEYLEXLMKA 295
P + + +F D +KN+ L +D+ T KG+ + + LE KA
Sbjct: 19 PEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKA 67
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 29.9 bits (64), Expect = 0.28
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 200 IKNVRLVMDKETDKFKGFCYVXFEYLEXLMKA 295
I+ VRL+ ++T K KGF +V F ++ MKA
Sbjct: 254 IRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKA 285
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.1 bits (62), Expect = 0.50
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 164 QGDINRIF-PDLSIKNVRLVMDKETDKFKGFCYVXFEYLEXLMKA 295
+ D+ +F P ++ V + +DK+T+ KGF Y+ F + ++A
Sbjct: 336 EDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRA 380
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.1 bits (62), Expect = 0.50
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 206 NVRLVMDKETDKFKGFCYVXFE 271
++ LV DKET K KGF ++ +E
Sbjct: 59 DINLVRDKETGKSKGFAFLKYE 80
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 200 IKNVRLVMDKETDKFKGFCYVXFEYLEXLMKA 295
I+ V L DKET + KGF +V + + +KA
Sbjct: 228 IQRVYLAKDKETGRAKGFAFVSYYDRDCAIKA 259
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 200 IKNVRLVMDKETDKFKGFCYVXFEYLEXLMK 292
I+++RL D ++ + KGF YV F ++ K
Sbjct: 392 IQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 197 SIKNVRLVMDKETDKFKGFCYVXFE 271
+I R++MD ++ + KG+ YV FE
Sbjct: 288 TIVGARVIMDGQSGRSKGYGYVDFE 312
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 143 ICPPAIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYVXFEYLE 280
+C +++ GDI ++ D +I L++ T+ G CYV + L+
Sbjct: 322 VCRKSLLVGDIVKVLADEAIPADLLIL--STENSNGVCYVETKNLD 365
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +2
Query: 125 IRRTLEICPPAIIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYV 262
I R + I PP I D N + ++ + D+E D K C V
Sbjct: 630 IAREVGIIPPFISDRDPNMSWMVMTGSQFDALSDEEVDSLKALCLV 675
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 158 IIQGDINRIFPDLSIKNVRLVMDKETDKFKGFCYV 262
I+ NR+ D + N R+V+D E + + YV
Sbjct: 40 ILYDSDNRVVDDFFLNNKRIVLDSEIEFNRTIVYV 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,793
Number of Sequences: 5004
Number of extensions: 21394
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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