Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_I12
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    28   1.4  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    27   3.1  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   3.1  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   4.2  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.2  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   9.6  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   9.6  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 312 YLDAQ-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 416
           Y DA  Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 70  YTDAGGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 622 SPGSDTASANVWRRTLSPPTVTSSVER---KPERLPEPYCIANWVPFATY 482
           SP SDT S N+    LSP +   S  R   +P R  +   ++N +  A +
Sbjct: 143 SPASDTHSQNIHDEALSPSSFRVSRSRYFPRPHRSSKNLSVSNRLQLAVF 192


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 419 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 315
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 635 GHEGKPGLRHGLGERL 588
           G EGKPG+  G+GE L
Sbjct: 72  GTEGKPGVSRGVGEEL 87


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 312 NLTMVRVKGQSHRILISTAPVQCQPHESGFSQFSYDVMAPYIVPLTELAISAKKNKDIFP 133
           NL +  V  +S++    T+ V C+ H  G SQ    + +P+I       IS  KN+ +F 
Sbjct: 82  NLVLDNVSSESNK----TSAVFCKRHV-GSSQVVIKIYSPHIKDYLPWTISCTKNEWVFD 136

Query: 132 IV 127
           ++
Sbjct: 137 ML 138


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 282 TGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHY 428
           +GP  +  S+ L A+Y+ VI  G+P +S      +G S ++  SK  +Y
Sbjct: 204 SGPDVQKASD-LCAKYFAVIPDGSPLKSAPTKISSGESRVY--SKGTNY 249


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 261 LRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPP 359
           LR  Y VT P  + ++N L A+Y     I TPP
Sbjct: 18  LRSGYSVTAPVSKSMANVLWARYAST-RIKTPP 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,037
Number of Sequences: 5004
Number of extensions: 50582
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)