Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_I10
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   210   1e-55
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    29   0.59 
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   1.4  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.4  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   2.4  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   5.5  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  210 bits (513), Expect = 1e-55
 Identities = 97/129 (75%), Positives = 109/129 (84%)
 Frame = +3

Query: 108 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 287
           SALPY RS P W K  AD V EQI K  KKG++PSQIGV LRDSHG+ QVRF+TG+KI+R
Sbjct: 14  SALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGIPQVRFITGQKIMR 73

Query: 288 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTXS 467
           I+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ESRIHRLARYY+   
Sbjct: 74  ILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVG 133

Query: 468 VLPPNWKYE 494
            LPP WKYE
Sbjct: 134 ALPPTWKYE 142


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +3

Query: 255 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 434
           +R    KK+   +KA G      EDL +L    +   +  +  +++K    RL ++  RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682

Query: 435 HRLARYYKTXSVLPPNWK 488
             L R Y+  ++  P W+
Sbjct: 683 DHLERAYRREAI--PLWE 698


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
 Frame = +3

Query: 96  VSPXSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGK 275
           VS  +  P   + P  +  ++DD   Q  +     L   QIG+ L D  G A V   T  
Sbjct: 47  VSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT-- 104

Query: 276 KILRIMKAMGLAPDL--PEDLYYLIKKAVAMRKHLE 377
              +      L  D+  PE +  L K  +  +KH E
Sbjct: 105 --WQFNFTFNLQDDMYAPESIELLTKSGIDFKKHQE 138


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 273 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESR 431
           KKI+ I     L      D YYL KKA  + +    N  +K+SK   I +E +
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKK 234


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 366 KHLERNRKDKDSKFRLILVESRIHRLARY 452
           K+  R +K+ D ++  +LVESR+H L R+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRH 59


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 270 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 395
           G+ + ++  A  +    PE+L+  +KK+ + +K   +  K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,314
Number of Sequences: 5004
Number of extensions: 36538
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)