Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_I04
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 252 4e-68
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 252 4e-68
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 252 4e-68
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 33 0.027
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 29 0.44
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 2.3
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 252 bits (616), Expect = 4e-68
Identities = 116/171 (67%), Positives = 141/171 (82%)
Frame = +1
Query: 46 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLHYAERHGYIKGVVKDIIHDPGRGAPLAV 225
MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAG 558
GDRG L R+SGN+ ++GH+ D +T VKLPSGAKKV+PSS RG+VGIVAG
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAG 170
Score = 64.5 bits (150), Expect = 1e-11
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +2
Query: 560 GGRIDKPILKAGRAYHKYKVKRNCWPYVRG 649
GGRIDKP+LKAGRA+HKY+VKRNCWP RG
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRG 200
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 252 bits (616), Expect = 4e-68
Identities = 116/171 (67%), Positives = 141/171 (82%)
Frame = +1
Query: 46 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLHYAERHGYIKGVVKDIIHDPGRGAPLAV 225
MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAG 558
GDRG L R+SGN+ ++GH+ D +T VKLPSGAKKV+PSS RG+VGIVAG
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAG 170
Score = 64.5 bits (150), Expect = 1e-11
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +2
Query: 560 GGRIDKPILKAGRAYHKYKVKRNCWPYVRG 649
GGRIDKP+LKAGRA+HKY+VKRNCWP RG
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRG 200
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 252 bits (616), Expect = 4e-68
Identities = 116/171 (67%), Positives = 141/171 (82%)
Frame = +1
Query: 46 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLHYAERHGYIKGVVKDIIHDPGRGAPLAV 225
MGRVIRAQRK +G +F +HT+ RKGA +LR+L +AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAG 558
GDRG L R+SGN+ ++GH+ D +T VKLPSGAKKV+PSS RG+VGIVAG
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAG 170
Score = 64.5 bits (150), Expect = 1e-11
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +2
Query: 560 GGRIDKPILKAGRAYHKYKVKRNCWPYVRG 649
GGRIDKP+LKAGRA+HKY+VKRNCWP RG
Sbjct: 171 GGRIDKPLLKAGRAFHKYRVKRNCWPRTRG 200
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 33.5 bits (73), Expect = 0.027
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -2
Query: 569 YVHLPATIPTMPLLLDGRTFLAPDGSFTXVRLASGLCPITVAKFPEARARRPLSPIXXSR 390
+ +LPAT+P F P F +L SGL V+ +P+ + +P SR
Sbjct: 242 FPNLPATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSR 301
Query: 389 L 387
L
Sbjct: 302 L 302
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 539 WSVLLLEGGR---IDKPILKAGRAYHKYKVKRNCWPYVRG 649
WS L+ G ++KPI K+K K +CW +RG
Sbjct: 55 WSKLVASGQNLSGVEKPIPVTKEELAKHKTKEDCWIAIRG 94
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 560 LPATIPTMPLLLDGRTFLAPDGSF 489
LP+ +P++P L G+ L DGSF
Sbjct: 319 LPSILPSIPSLESGKAELPTDGSF 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,661
Number of Sequences: 5004
Number of extensions: 59095
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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