Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_I04
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      254   4e-68
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    33   0.15 
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.4  
04_01_0618 - 8094991-8097288                                           28   7.4  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    28   7.4  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  254 bits (622), Expect = 4e-68
 Identities = 114/171 (66%), Positives = 141/171 (82%)
 Frame = +1

Query: 46  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLHYAERHGYIKGVVKDIIHDPGRGAPLAV 225
           MGRVIRAQRKGAGSVF SHT  RKG  + RSL + ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAG 558
           GDRG  ARASG++A VI HNPD   + +KLPSGAKK++PSS R M+G VAG
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAG 171



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +2

Query: 560 GGRIDKPILKAGRAYHKYKVKRNCWPYVRG 649
           GGR +KP+LKAG AYHKY+VKRNCWP VRG
Sbjct: 172 GGRTEKPMLKAGNAYHKYRVKRNCWPKVRG 201


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 487 VKLPSGAKKVLPSSNRGMVGIVAGRWTY*QTYFESWKGIPQVQG 618
           V +P+     +  S  G VG     WTY  T+F SW  +P +QG
Sbjct: 48  VLVPADISTTITGSQEGDVGFFWS-WTYWSTFFLSWSIVPTLQG 90


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 432 LWKLRHCDWT 461
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>04_01_0618 - 8094991-8097288
          Length = 765

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 237 RSIQVQDKEGALHCSRRALHRPICLLW 317
           R  Q+ D++  + C+ R   +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 463 CVQSQWRSFQRHVPDDLYHPFXXQDCTQWY 374
           C    W++   H+P  L H     +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,072,888
Number of Sequences: 37544
Number of extensions: 416839
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)