Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_I04
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   268   2e-72
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    36   0.019
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  268 bits (657), Expect = 2e-72
 Identities = 117/171 (68%), Positives = 143/171 (83%)
 Frame = +1

Query: 46  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLHYAERHGYIKGVVKDIIHDPGRGAPLAV 225
           MGR IR QRKGAG +F SH K RKGA KLR L YAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 226 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 405
           + FRDPYK+KT K   +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K 
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120

Query: 406 GDRGRLARASGNFATVIGHNPDAKRTXVKLPSGAKKVLPSSNRGMVGIVAG 558
           GDRG +ARASGN+ATVI HNPD K+T ++LPSGAKKV+ S NR M+G+VAG
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAG 171



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 25/34 (73%), Positives = 28/34 (82%)
 Frame = +2

Query: 548 LLLEGGRIDKPILKAGRAYHKYKVKRNCWPYVRG 649
           L+  GGR DKP+LKAGR+YHKYK KRN WP VRG
Sbjct: 168 LVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRG 201


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +1

Query: 340 GNVMPVGAMPEGTIVCNLE-XKMGDRGRLARASGNFATVIGHNPDAKRTXVKLP 498
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 157 HGYIKGVVKDIIHDPGRGAPLAVVHFR 237
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 157 HGYIKGVVKDIIHDPGRGAPLAVVHFR 237
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 549 CCWKVDVLTNLF*KLEGHTTSTRSNVTAGH 638
           CC K   +   F KL G TT++ +N   GH
Sbjct: 430 CCLKYKNMAAKFRKLSGSTTNSNNNGNNGH 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,797
Number of Sequences: 27780
Number of extensions: 351126
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)