Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_H21
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   233   1e-62
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   132   6e-32
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   128   5e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   124   1e-29
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   3.1  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   4.1  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   4.1  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   7.2  
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    25   9.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  233 bits (571), Expect = 1e-62
 Identities = 104/145 (71%), Positives = 122/145 (84%)
 Frame = +3

Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
           MREIVH+QAGQCGNQ+GA FW  I++EHG+D  G+Y GTS+ Q ER++VY+NEA+     
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA----- 55

Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
            GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 56  -GGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114

Query: 468 AVLDVVRKECXNCDCLQGFQLTHSL 542
           AVLDVVR+E   CD LQGFQLTHSL
Sbjct: 115 AVLDVVRREAEACDALQGFQLTHSL 139



 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +1

Query: 574 LLISKIREXYPDRIMNTYSVXPRPK 648
           LL+SKIRE YPDR+M T+SV P PK
Sbjct: 150 LLLSKIREEYPDRMMATFSVAPAPK 174


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  132 bits (318), Expect = 6e-32
 Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
 Frame = +3

Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA-SVATA 284
           MRE++ +  GQ G QIG   WE+   EHGI P G    T + ++ + + Y N+      +
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLNDGFGTFFS 58

Query: 285 ESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 461
           E+G GK+VPR+I +DLEP  +D VR+G Y  LF P+  V G+  A NN+A+GHYT G E+
Sbjct: 59  ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118

Query: 462 VDAVLDVVRKECXNCDCLQGFQLTHS 539
           +D+VL+ +R+   NC  LQGF + HS
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFHS 144


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  128 bits (310), Expect = 5e-31
 Identities = 65/146 (44%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
 Frame = +3

Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLER--ISVYYNEASVAT 281
           MREI+ +  GQ G QIG   WE+   EHGI P G     +  Q      S +++E     
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58

Query: 282 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 461
               GKYVPR+I +DLEP  +D VR+G Y  LF P+  + G+  A NN+A+GHYT G EL
Sbjct: 59  ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114

Query: 462 VDAVLDVVRKECXNCDCLQGFQLTHS 539
           VD V D +R+   NC  LQGF + HS
Sbjct: 115 VDEVTDKIRRIADNCSGLQGFLVFHS 140


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  124 bits (298), Expect = 1e-29
 Identities = 58/146 (39%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
 Frame = +3

Query: 111 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 290
           REI+ LQAGQCGNQIG++FW+ +  EHGI P G     +   ++R  V++ ++       
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS------D 56

Query: 291 GGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQS--GAGNNWAKGHYTEGAELV 464
             +Y+PRAIL+DLEP  ++ + S  YG L+ P+N +  ++  GAGNNWA G Y+    + 
Sbjct: 57  DTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIF 115

Query: 465 DAVLDVVRKECXNCDCLQGFQLTHSL 542
           + ++D++ +E    D L+GF L HS+
Sbjct: 116 EDIMDMIDREADGSDSLEGFSLLHSI 141



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 577 LISKIREXYPDRIMNTYSVXP 639
           L+ ++ + YP +I+ TYSV P
Sbjct: 153 LLERLNDRYPKKIIQTYSVFP 173


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 147 NQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERI 248
           N++G    E+++E+  +DPT   +   DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 429 AKGHYTEGAELVDAVLDVVRKECXNCDCLQ 518
           A+GH   G ELV A  D +RK+  N   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 219 GTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLE 332
           G+SD+ +  +S +  EAS  +  S    VP+ +L D +
Sbjct: 49  GSSDVTMTSVSGHLTEASFPSEYSSWSSVPQDVLFDAQ 86


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 360 GAYGQLFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 461
           G YG +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = +3

Query: 204 TGVYRGTSDLQLERISVYYNEASVATAESGGKYV------PRAILLDLEPGTMDAVRSG 362
           TGV R    L +E  +V  +   +  A SGG Y        R I+L+ EPGT  +   G
Sbjct: 250 TGVARTGKMLCIEHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGG 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,652
Number of Sequences: 5004
Number of extensions: 31677
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)