Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_H21
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 266 1e-71
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 264 3e-71
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 258 2e-69
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 257 4e-69
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 254 5e-68
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 254 5e-68
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 184 4e-47
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 184 4e-47
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 132 2e-31
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 132 3e-31
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 132 3e-31
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 131 4e-31
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 131 4e-31
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 130 8e-31
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 126 1e-29
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 126 1e-29
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 124 6e-29
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 124 6e-29
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 124 6e-29
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 124 7e-29
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 123 1e-28
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 122 2e-28
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 121 4e-28
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 101 3e-22
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 95 5e-20
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 95 5e-20
Z92790-2|CAB07224.2| 377|Caenorhabditis elegans Hypothetical pr... 28 6.7
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 266 bits (651), Expect = 1e-71
Identities = 129/182 (70%), Positives = 140/182 (76%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MREIVH+QAGQCGNQIGAKFWE+IS+EHGIDPTG Y G SDLQLERI+VYYNEAS
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDLQLERINVYYNEAS----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
GGKYVPRA L+DLEPGTMD+VR+G +GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD
Sbjct: 56 -GGKYVPRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSLXXXXXXXXXXXXXLKDP*XVPRQNHEHILSXPSPK 647
VLDVVRKE +CDCLQGFQ+THSL K P + PSPK
Sbjct: 115 NVLDVVRKEAESCDCLQGFQMTHSLGGGTGSGMGTLLISKIREEYPDRIMMTFSVVPSPK 174
Query: 648 VS 653
VS
Sbjct: 175 VS 176
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 264 bits (648), Expect = 3e-71
Identities = 128/182 (70%), Positives = 139/182 (76%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MREIVH+QAGQCGNQIGAKFWE+IS+EHGI P G Y+G SDLQLERI+VYYNEA+
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDGTYKGESDLQLERINVYYNEAN----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
GGKYVPRA+L+DLEPGTMD+VRSG +GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD
Sbjct: 56 -GGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSLXXXXXXXXXXXXXLKDP*XVPRQNHEHILSXPSPK 647
VLDVVRKE CDCLQGFQLTHSL K P + PSPK
Sbjct: 115 NVLDVVRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPK 174
Query: 648 VS 653
VS
Sbjct: 175 VS 176
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 258 bits (633), Expect = 2e-69
Identities = 124/182 (68%), Positives = 137/182 (75%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MREIVH+QAGQCGNQIG+KFWE+IS+EHGI P G ++G SDLQLERI VYYNEA+
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGESDLQLERIDVYYNEAN----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
GKYVPRA+L+DLEPGTMD+VRSG +GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD
Sbjct: 56 -NGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSLXXXXXXXXXXXXXLKDP*XVPRQNHEHILSXPSPK 647
VLDV+RKE CDCLQGFQLTHSL K P + PSPK
Sbjct: 115 NVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMSSFSVVPSPK 174
Query: 648 VS 653
VS
Sbjct: 175 VS 176
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 257 bits (630), Expect = 4e-69
Identities = 123/182 (67%), Positives = 137/182 (75%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MREIVH+QAGQCGNQIG+KFWE+IS+EHGI P G ++G +DLQLERI VYYNEA+
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEAN----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
GKYVPRA+L+DLEPGTMD+VRSG +GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD
Sbjct: 56 -NGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSLXXXXXXXXXXXXXLKDP*XVPRQNHEHILSXPSPK 647
VLDV+RKE CDCLQGFQLTHSL K P + PSPK
Sbjct: 115 NVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPK 174
Query: 648 VS 653
VS
Sbjct: 175 VS 176
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 254 bits (621), Expect = 5e-68
Identities = 124/182 (68%), Positives = 137/182 (75%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MREIVH+QAGQCGNQIG+KFWE+IS+EHGIDP+G Y G SDLQLERI+VYYNEA
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAG----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
KYVPRA+L+DLEPGTMD+VRSG +GQLFRPDN+VFGQSGAGNNWAKGHYTEGAELVD
Sbjct: 56 -SNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVD 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSLXXXXXXXXXXXXXLKDP*XVPRQNHEHILSXPSPK 647
VLDVVRKE + DCLQGFQLTHSL K P + PSPK
Sbjct: 115 NVLDVVRKEAESTDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174
Query: 648 VS 653
VS
Sbjct: 175 VS 176
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 254 bits (621), Expect = 5e-68
Identities = 124/182 (68%), Positives = 137/182 (75%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MREIVH+QAGQCGNQIG+KFWE+IS+EHGIDP+G Y G SDLQLERI+VYYNEA
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDLQLERINVYYNEAG----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
KYVPRA+L+DLEPGTMD+VRSG +GQLFRPDN+VFGQSGAGNNWAKGHYTEGAELVD
Sbjct: 56 -SNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGHYTEGAELVD 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSLXXXXXXXXXXXXXLKDP*XVPRQNHEHILSXPSPK 647
VLDVVRKE + DCLQGFQLTHSL K P + PSPK
Sbjct: 115 NVLDVVRKEAESTDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPK 174
Query: 648 VS 653
VS
Sbjct: 175 VS 176
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 184 bits (449), Expect = 4e-47
Identities = 85/145 (58%), Positives = 109/145 (75%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
M+EI+++Q GQCGNQIGAKFWE ISEEHG+ G Y+G + QLERI+ YY E
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEME----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
G KYVPRAIL+DL+P +++ VRS YG+LF P+N V G+SGAGNNW++G+Y +GAE+VD
Sbjct: 56 -GRKYVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVD 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSL 542
VL V+R+E D L+GFQL HSL
Sbjct: 115 KVLSVIRREAEAADSLEGFQLIHSL 139
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 574 LLISKIREXYPDRIMNTYSVXPRPK 648
LLISK+RE Y D+ ++T S+ P K
Sbjct: 150 LLISKLREEYSDKTLSTCSIIPSAK 174
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 184 bits (449), Expect = 4e-47
Identities = 85/145 (58%), Positives = 109/145 (75%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
M+EI+++Q GQCGNQIGAKFWE ISEEHG+ G Y+G + QLERI+ YY E
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGDNGSQLERITSYYKEME----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
G KYVPRAIL+DL+P +++ VRS YG+LF P+N V G+SGAGNNW++G+Y +GAE+VD
Sbjct: 56 -GRKYVPRAILVDLDPESINYVRSTQYGKLFDPENAVSGESGAGNNWSRGYYEQGAEIVD 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSL 542
VL V+R+E D L+GFQL HSL
Sbjct: 115 KVLSVIRREAEAADSLEGFQLIHSL 139
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 574 LLISKIREXYPDRIMNTYSVXPRPK 648
LLISK+RE Y D+ ++T S+ P K
Sbjct: 150 LLISKLREEYSDKTLSTCSIIPSAK 174
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 132 bits (320), Expect = 2e-31
Identities = 63/144 (43%), Positives = 89/144 (61%), Gaps = 1/144 (0%)
Frame = +3
Query: 111 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTS-DLQLERISVYYNEASVATAE 287
RE V + GQ G QIG WE+ EHG+D G + + + + + +++E+
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQQSLQAFFSESM----- 60
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
GK+VPRAI +DLEP +D +R+G YG LF PD + G+ A NN+A+GHYT G EL+D
Sbjct: 61 -NGKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGHYTIGKELID 119
Query: 468 AVLDVVRKECXNCDCLQGFQLTHS 539
VLD +RK+ NC+ LQGF + HS
Sbjct: 120 VVLDRIRKQTENCEGLQGFLVFHS 143
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 132 bits (318), Expect = 3e-31
Identities = 61/144 (42%), Positives = 87/144 (60%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MRE++ + GQ G QIG WE+ EHGI P G S + E + ++++
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTG----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
G+YVPR+I +DLEP +D +R+G Y +LF P+ + G+ A NN+A+GHYT G EL+D
Sbjct: 56 -SGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELID 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHS 539
VLD +R+ NC LQGF + HS
Sbjct: 115 TVLDRIRRLADNCSGLQGFFVFHS 138
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 132 bits (318), Expect = 3e-31
Identities = 61/144 (42%), Positives = 87/144 (60%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MRE++ + GQ G QIG WE+ EHGI P G S + E + ++++
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTG----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
G+YVPR+I +DLEP +D +R+G Y +LF P+ + G+ A NN+A+GHYT G EL+D
Sbjct: 56 -SGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELID 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHS 539
VLD +R+ NC LQGF + HS
Sbjct: 115 TVLDRIRRLADNCSGLQGFFVFHS 138
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 131 bits (317), Expect = 4e-31
Identities = 60/144 (41%), Positives = 85/144 (59%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MRE++ + GQ G QIG WE+ EHGI P G E + ++++
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTG----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
G+YVPR+I +DLEP +D +R+G Y +LF P+ + G+ A NN+A+GHYT G EL+D
Sbjct: 56 -NGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELID 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHS 539
VLD +R+ NC LQGF + HS
Sbjct: 115 TVLDRIRRLADNCSGLQGFFVFHS 138
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 131 bits (317), Expect = 4e-31
Identities = 60/144 (41%), Positives = 85/144 (59%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MRE++ + GQ G QIG WE+ EHGI P G E + ++++
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADGESFTTFFSDTG----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
G+YVPR+I +DLEP +D +R+G Y +LF P+ + G+ A NN+A+GHYT G EL+D
Sbjct: 56 -NGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELID 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHS 539
VLD +R+ NC LQGF + HS
Sbjct: 115 TVLDRIRRLADNCSGLQGFFVFHS 138
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 130 bits (314), Expect = 8e-31
Identities = 67/144 (46%), Positives = 86/144 (59%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MREIV + GQ G QIG WE+ EHGI P G+ + +E S YN T
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQS--YNTFFSETPS 58
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
GK+VPRAI +DLEP +D VR+G Y +LF P+ + G+ A NN+A+GHYT G EL+D
Sbjct: 59 --GKHVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELID 116
Query: 468 AVLDVVRKECXNCDCLQGFQLTHS 539
V+D VR+ C LQGF + HS
Sbjct: 117 VVMDRVRRLTERCQSLQGFLIFHS 140
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 126 bits (304), Expect = 1e-29
Identities = 58/144 (40%), Positives = 84/144 (58%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MRE++ + GQ G QIG WE+ EHGI P G + + ++++
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTG----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
G+YVPR+I +DLEP +D +R+G Y +LF P+ + G+ A NN+A+GHYT G EL+D
Sbjct: 56 -NGRYVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELID 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHS 539
LD +R+ NC LQGF + HS
Sbjct: 115 TTLDRIRRLADNCSGLQGFFVFHS 138
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 126 bits (304), Expect = 1e-29
Identities = 58/144 (40%), Positives = 84/144 (58%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MRE++ + GQ G QIG WE+ EHGI P G + + ++++
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGGSFTTFFSDTG----- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
G+YVPR+I +DLEP +D +R+G Y +LF P+ + G+ A NN+A+GHYT G EL+D
Sbjct: 56 -NGRYVPRSIFVDLEPTVVDEIRTGNYKKLFHPEQMITGKEDAANNYARGHYTVGKELID 114
Query: 468 AVLDVVRKECXNCDCLQGFQLTHS 539
LD +R+ NC LQGF + HS
Sbjct: 115 TTLDRIRRLADNCSGLQGFFVFHS 138
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 124 bits (299), Expect = 6e-29
Identities = 59/146 (40%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDL--QLERISVYYNEASVAT 281
MRE++ + GQ G QIG WE+ EHGI P G L + S +++E
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETG--- 57
Query: 282 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 461
G++VPRA+++DLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E+
Sbjct: 58 ---SGRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEI 114
Query: 462 VDAVLDVVRKECXNCDCLQGFQLTHS 539
+D LD +R+ NC LQGF + HS
Sbjct: 115 IDLTLDRIRRLADNCTGLQGFLVFHS 140
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 124 bits (299), Expect = 6e-29
Identities = 59/146 (40%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDL--QLERISVYYNEASVAT 281
MRE++ + GQ G QIG WE+ EHGI P G L + S +++E
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETG--- 57
Query: 282 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 461
G++VPRA+++DLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E+
Sbjct: 58 ---SGRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEI 114
Query: 462 VDAVLDVVRKECXNCDCLQGFQLTHS 539
+D LD +R+ NC LQGF + HS
Sbjct: 115 IDLTLDRIRRLADNCTGLQGFLVFHS 140
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 124 bits (299), Expect = 6e-29
Identities = 59/146 (40%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDL--QLERISVYYNEASVAT 281
MRE++ + GQ G QIG WE+ EHGI P G L + S +++E
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETG--- 57
Query: 282 AESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 461
G++VPRA+++DLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E+
Sbjct: 58 ---SGRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEI 114
Query: 462 VDAVLDVVRKECXNCDCLQGFQLTHS 539
+D LD +R+ NC LQGF + HS
Sbjct: 115 IDLTLDRIRRLADNCTGLQGFLVFHS 140
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 124 bits (298), Expect = 7e-29
Identities = 61/145 (42%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Frame = +3
Query: 111 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG--VYRGTSDLQLERISVYYNEASVATA 284
RE++ + GQ G QIG WE+ EHGI P G V T D + E I+ ++ E +
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDTYDEETETINTFFAETA---- 63
Query: 285 ESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 464
GGK+VPR + +DLEP +D VR+G Y LF P+ + G+ A N +A+G YT G E++
Sbjct: 64 --GGKHVPRCLFVDLEPTVVDEVRTGTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMI 121
Query: 465 DAVLDVVRKECXNCDCLQGFQLTHS 539
D V+D V++ NC+ LQGF + HS
Sbjct: 122 DVVMDRVKRLAENCNGLQGFVIFHS 146
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 123 bits (297), Expect = 1e-28
Identities = 61/143 (42%), Positives = 86/143 (60%)
Frame = +3
Query: 111 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAES 290
RE++ + GQ G Q+G WE+ EHGI P G+ L ++ S +N T
Sbjct: 7 REVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDS--FNTFFSETM-- 62
Query: 291 GGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDA 470
GK+VPRAI++DLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E++D
Sbjct: 63 AGKHVPRAIMVDLEPTPIDEIRTGTYKTLFHPEQLLTGKEDAANNYARGHYTIGKEIIDV 122
Query: 471 VLDVVRKECXNCDCLQGFQLTHS 539
V+D VR+ NC LQGF + HS
Sbjct: 123 VMDRVRRLVENCRGLQGFLVFHS 145
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 122 bits (294), Expect = 2e-28
Identities = 58/145 (40%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Frame = +3
Query: 111 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDL--QLERISVYYNEASVATA 284
RE++ + GQ G QIG WE+ EHGI P G L + S +++E
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETG---- 56
Query: 285 ESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELV 464
G++VPRA+++DLEP +D +R+G Y LF P+ + G+ A NN+A+GHYT G E++
Sbjct: 57 --SGRHVPRAVMVDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEII 114
Query: 465 DAVLDVVRKECXNCDCLQGFQLTHS 539
D LD +R+ NC LQGF + HS
Sbjct: 115 DLTLDRIRRLADNCTGLQGFLVFHS 139
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 121 bits (292), Expect = 4e-28
Identities = 58/144 (40%), Positives = 86/144 (59%)
Frame = +3
Query: 108 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAE 287
MRE++ + GQ G QIG WE+ EHGI P G D + ++++
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDGTSM-EPDGNSGSLGTFFSDTGY---- 55
Query: 288 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 467
G++VPR+I +DLEP +D +R+GAY +LF P+ + G+ A NN+A+GHYT G E++D
Sbjct: 56 --GRHVPRSIFVDLEPTVVDEIRTGAYKKLFHPEQMLTGKEDAANNYARGHYTVGKEIID 113
Query: 468 AVLDVVRKECXNCDCLQGFQLTHS 539
LD +R+ NC+ LQGF + HS
Sbjct: 114 TTLDRIRRLANNCEGLQGFFVFHS 137
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 101 bits (243), Expect = 3e-22
Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Frame = +3
Query: 186 EHGIDPTG--VYRGTSDLQLERISVYYNEASVATAESGGKYVPRAILLDLEPGTMDAVRS 359
EHGI P G V T D + E I+ ++ E + GGK+VPR + +DLEP +D VR+
Sbjct: 5 EHGIQPDGYHVEDDTYDEETETINTFFAETA------GGKHVPRCLFVDLEPTVVDEVRT 58
Query: 360 GAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKECXNCDCLQGFQLTHS 539
G Y LF P+ + G+ A N +A+G YT G E++D V+D V++ NC+ LQGF + HS
Sbjct: 59 GTYRSLFHPEQLLSGKEDAANCYARGRYTIGREMIDVVMDRVKRLAENCNGLQGFVIFHS 118
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 94.7 bits (225), Expect = 5e-20
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Frame = +3
Query: 117 IVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGG 296
++ + GQCGNQ+ FW+ + +EHGI+ G D+ ++ ++Y
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFYQ-------ADDD 59
Query: 297 KYVPRAILLDLEPGTMDA-VRSGAYGQLFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVD 467
YVPRA+L+DLEP ++ ++S + LF DN GAGNNWA G Y +G E+ +
Sbjct: 60 HYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQE 118
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSL 542
++D++ +E N + L G THS+
Sbjct: 119 KIMDIIIREAENTNNLDGILFTHSV 143
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 574 LLISKIREXYPDRIMNTYSV 633
LL+ ++RE +P +++ TYSV
Sbjct: 154 LLLERLREAFPKKVIQTYSV 173
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 94.7 bits (225), Expect = 5e-20
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Frame = +3
Query: 117 IVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASVATAESGG 296
++ + GQCGNQ+ FW+ + +EHGI+ G D+ ++ ++Y
Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDMNDKKDLLFYQ-------ADDD 59
Query: 297 KYVPRAILLDLEPGTMDA-VRSGAYGQLFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVD 467
YVPRA+L+DLEP ++ ++S + LF DN GAGNNWA G Y +G E+ +
Sbjct: 60 HYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQE 118
Query: 468 AVLDVVRKECXNCDCLQGFQLTHSL 542
++D++ +E N + L G THS+
Sbjct: 119 KIMDIIIREAENTNNLDGILFTHSV 143
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 574 LLISKIREXYPDRIMNTYSV 633
LL+ ++RE +P +++ TYSV
Sbjct: 154 LLLERLREAFPKKVIQTYSV 173
>Z92790-2|CAB07224.2| 377|Caenorhabditis elegans Hypothetical
protein H03G16.2 protein.
Length = 377
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 132 AGQCGNQIGAKFWEIISEEHGIDPTGVYR 218
+G C ++G K WE+ SE G PTG+ +
Sbjct: 233 SGDCLKKMGKK-WEVTSEAVGPRPTGILK 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,134,060
Number of Sequences: 27780
Number of extensions: 187538
Number of successful extensions: 517
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -