Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_H16
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   132   5e-32
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   2.3  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   3.0  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   6.9  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   9.1  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  132 bits (318), Expect = 5e-32
 Identities = 66/131 (50%), Positives = 94/131 (71%), Gaps = 2/131 (1%)
 Frame = +2

Query: 167 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 340
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 341 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 520
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 521 YDAILXGLGLP 553
           ++AIL  +  P
Sbjct: 124 HNAILEDIVFP 134



 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 562 IVGKRIRVKLDGSQLIKVHLD 624
           I+GKR R   DG + IKV LD
Sbjct: 137 IIGKRTRQATDGRKTIKVFLD 157


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 459 LGLGRILRSPTKTTCLPLNFFSSSRTS 379
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 329 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 421
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 142  LLHWNDEYEDHQSERC*GGFLRDLDLAGA 228
            + +WND Y + ++ER    FL+DL++  A
Sbjct: 998  ICNWNDSYGEFETER--RYFLQDLEIEDA 1024


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 505 P*AWPLLFVSNTSFVAGLRQDLTVSN 428
           P A  +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,644
Number of Sequences: 5004
Number of extensions: 43448
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)