Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_H16
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 116 2e-26
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 100 1e-21
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 66 2e-11
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.3
07_01_0383 - 2856777-2858042,2858238-2858270,2858607-2858742,286... 29 3.1
04_04_1644 + 35015849-35016838 29 3.1
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 4.1
03_02_0488 - 8824980-8825267,8825364-8827775 29 4.1
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 7.1
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905... 28 7.1
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 9.4
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 116 bits (278), Expect = 2e-26
Identities = 63/135 (46%), Positives = 90/135 (66%), Gaps = 2/135 (1%)
Frame = +2
Query: 155 TMSTKIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSII 328
T KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++
Sbjct: 3 TARKKIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVV 62
Query: 329 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRT 508
I+VP KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RT
Sbjct: 63 IHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRT 118
Query: 509 LTSVYDAILXGLGLP 553
LT+V+D IL + P
Sbjct: 119 LTAVHDGILEDVVYP 133
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +1
Query: 562 IVGKRIRVKLDGSQLIKVHLDXNQ 633
IVGKRIR +LDG+++IK+ LD +
Sbjct: 136 IVGKRIRYRLDGAKVIKIFLDPKE 159
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 100 bits (239), Expect = 1e-21
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
Frame = +2
Query: 221 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 394
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 395 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILXGLGLP 553
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D IL + P
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYP 146
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 562 IVGKRIRVKLDGSQLIKVHLDXNQ 633
IVGKR+R LDG +++K+ LD +
Sbjct: 149 IVGKRVRYHLDGRKIMKIFLDPKE 172
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 66.5 bits (155), Expect = 2e-11
Identities = 38/87 (43%), Positives = 56/87 (64%)
Frame = +2
Query: 275 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 454
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 455 PSHKTRVANKQKRPRSRTLTSVYDAIL 535
P +K + PR+RTL +V+D IL
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGIL 112
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 489 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 373
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>07_01_0383 -
2856777-2858042,2858238-2858270,2858607-2858742,
2860778-2860890
Length = 515
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 585 DPDALAYDXXQGRPSPSRIASYTEVNVLERGLFCLLATRVLWLGLGRILRSP 430
DP+ ++D +G P P RI V+ LE + ++ R L + +G + + P
Sbjct: 429 DPETDSWDSVKGPPMPERIMKPFSVSCLENKI--VVVGRGLHVAIGHVKKQP 478
>04_04_1644 + 35015849-35016838
Length = 329
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 271 PKLGFEVGVGFEFDQRLRDRGLEGIRLSTARFDDLRTHR 155
P L FE+ + +FDQR+ E ++L DL HR
Sbjct: 134 PALAFEINLS-DFDQRVHRHAAESVQLLAEHGVDLAAHR 171
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +2
Query: 227 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 361
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +2
Query: 227 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 361
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 176 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 352
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 353 KAFQKI 370
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +2
Query: 227 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 361
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>03_04_0228 -
18989688-18989807,18990300-18990345,18990452-18990552,
18990624-18990702,18990788-18990868,18991440-18991502,
18994171-18994246,18994980-18995246,18995994-18996076,
18996792-18996922,18997043-18997174
Length = 392
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 481 QTKEATLKDIDLCVRCYPRXTWSSLXXIVGK 573
Q ++++LK CVRC+P T +L + G+
Sbjct: 184 QKRDSSLKYQTRCVRCFPNGTGYALSSVEGR 214
>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 499 AWPLLFVSNTSFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQF 347
AW L +S+++ ++ L +S KD+M +L FE D+P + F
Sbjct: 1167 AWKSLAISSSAMLS-----LMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,724,426
Number of Sequences: 37544
Number of extensions: 276177
Number of successful extensions: 710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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