Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_H14
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.4  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   1.9  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   2.5  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.3  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   7.7  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   7.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -2

Query: 338 TAIPPAPFEETRADCGEGAPPPDPPTHSLPE-PSLAKAIIRSYNPI 204
           T   P P   +RA     APPP  P  S P  P L  A   S  P+
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV 417


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 374 VFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 264
           VFPS N  G R + +P    + T  D GE   P  PP
Sbjct: 459 VFPSINSFGRRHSNLP----QTTHVDTGEQNTPFTPP 491


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 365 SCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 264
           +C G G RL  IPP+   +T  D   G     PP
Sbjct: 259 ACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTIPP 292


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 410 LTCVKHQFCATGVFPSCNGLGTRLTAI 330
           L+CV  +F  TGV P  + +G RLT I
Sbjct: 187 LSCVPVEFQLTGVKPENSKVGWRLTKI 213


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 257 SLPEPSLAKAIIRSYNPIFQNVTTF 183
           ++PE  LAK++  + NP+    T+F
Sbjct: 203 NMPESGLAKSLAAARNPLLNRPTSF 227


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 151 KKIKXKSXNRSTPICESVSRLTVSLHHMAST*VERSGVVRA 29
           K++   S   ++P  +S++   VSLH        RS +VRA
Sbjct: 425 KRLTNSSNYEASPRAKSLNLSQVSLHQACEPEYNRSSLVRA 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,342
Number of Sequences: 5004
Number of extensions: 35996
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)