Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_H14
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30662-10|CAI58651.1| 409|Caenorhabditis elegans Hypothetical p... 69 2e-12
Z30662-9|CAA83138.2| 451|Caenorhabditis elegans Hypothetical pr... 69 2e-12
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 32 0.25
U23177-9|AAA64327.1| 217|Caenorhabditis elegans Hypothetical pr... 31 0.76
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 29 1.7
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 29 1.7
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 29 1.7
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 29 1.7
AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical ... 29 1.7
AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical ... 29 1.7
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 29 1.7
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 29 2.3
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 3.1
AC006624-1|AAF39785.1| 73|Caenorhabditis elegans Hypothetical ... 29 3.1
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 28 4.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 4.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 4.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 4.0
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 28 5.3
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 27 7.0
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 27 7.0
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 27 7.0
U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical pr... 27 7.0
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 27 7.0
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 27 7.0
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 27 7.0
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 27 7.0
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 27 7.0
U27312-5|AAA68249.2| 121|Caenorhabditis elegans Hypothetical pr... 27 9.3
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 27 9.3
>Z30662-10|CAI58651.1| 409|Caenorhabditis elegans Hypothetical
protein T16H12.5b protein.
Length = 409
Score = 68.9 bits (161), Expect = 2e-12
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = +3
Query: 447 FSXCTXXMGELLKSSTFSAGATDKLQWCLRVNPKGLDE 560
FS C MGE+LKSSTFSAG DKL+WCLR+NPKGLDE
Sbjct: 63 FSFCREEMGEVLKSSTFSAGCNDKLKWCLRINPKGLDE 100
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Frame = +1
Query: 310 SSNGAGGMAVSRVPSPLHDGNT--PVAQNWCFTQVKVVKFXYMWTINN 447
S N A G ++S PS G+ PVA+NWC TQVKVVKF YMWTINN
Sbjct: 15 SGNSAHGRSISPSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINN 62
>Z30662-9|CAA83138.2| 451|Caenorhabditis elegans Hypothetical
protein T16H12.5a protein.
Length = 451
Score = 68.9 bits (161), Expect = 2e-12
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = +3
Query: 447 FSXCTXXMGELLKSSTFSAGATDKLQWCLRVNPKGLDE 560
FS C MGE+LKSSTFSAG DKL+WCLR+NPKGLDE
Sbjct: 105 FSFCREEMGEVLKSSTFSAGCNDKLKWCLRINPKGLDE 142
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/48 (60%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Frame = +1
Query: 310 SSNGAGGMAVSRVPSPLHDGNT--PVAQNWCFTQVKVVKFXYMWTINN 447
S N A G ++S PS G+ PVA+NWC TQVKVVKF YMWTINN
Sbjct: 57 SGNSAHGRSISPSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINN 104
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = -2
Query: 419 FTTLTCVKHQFCATGVFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTHSLPEPS 240
FT++ F G G PPA CG GAPP PP ++ P PS
Sbjct: 7 FTSMIAASSAFLFPSAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPP--PPAYAAPAPS 64
>U23177-9|AAA64327.1| 217|Caenorhabditis elegans Hypothetical
protein C56G2.15 protein.
Length = 217
Score = 30.7 bits (66), Expect = 0.76
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = -2
Query: 401 VKHQFCATGVFPSCNGLGTRLTAIPP--APFEETRADC--GEGAPPPDPPTHSLPEPSLA 234
+ H AT +FP+ N + P + + A APPP PP P
Sbjct: 134 IVHSTTATCIFPAMNHFQNAAASNPSFLSKIAQPSASSTVSASAPPPPPP-----PPMAP 188
Query: 233 KAIIRSYNPIFQNVTTFKHSY 171
K + RS +PI +V T H Y
Sbjct: 189 KMVTRSTSPIV-DVNTIDHQY 208
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 293 GEGAPPPDPPTHSLPEPSLAKAIIRSYNPIFQNVTTFKHS 174
G GAPPP +++P P + A+ S P ++++ +H+
Sbjct: 544 GYGAPPPSREANNVPMPRVKGALDCSLLPAIEHLSRTRHA 583
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 293 GEGAPPPDPPTHSLPEPSLAKAIIRSYNPIFQNVTTFKHS 174
G GAPPP +++P P + A+ S P ++++ +H+
Sbjct: 557 GYGAPPPSREANNVPMPRVKGALDCSLLPAIEHLSRTRHA 596
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 293 GEGAPPPDPPTHSLPEPSLAKAIIRSYNPIFQNVTTFKHS 174
G GAPPP +++P P + A+ S P ++++ +H+
Sbjct: 556 GYGAPPPSREANNVPMPRVKGALDCSLLPAIEHLSRTRHA 595
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 293 GEGAPPPDPPTHSLPEPSLAKAIIRSYNPIFQNVTTFKHS 174
G GAPPP +++P P + A+ S P ++++ +H+
Sbjct: 559 GYGAPPPSREANNVPMPRVKGALDCSLLPAIEHLSRTRHA 598
>AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical
protein W05F2.4b protein.
Length = 806
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 323 APFEE-TRADCGEGAPPPDPPTHSLPE 246
+P +E T A +PPP PP+H LP+
Sbjct: 557 SPLQEVTYASLNSYSPPPPPPSHPLPQ 583
>AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical
protein W05F2.4a protein.
Length = 834
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 323 APFEE-TRADCGEGAPPPDPPTHSLPE 246
+P +E T A +PPP PP+H LP+
Sbjct: 585 SPLQEVTYASLNSYSPPPPPPSHPLPQ 611
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 299 DCGEGAPPPDPPTHSLPEPSLAKAIIRSYNPIFQNVTTFKHSYDHES 159
D G P P TH PE S K I +PI Q + +H+ H S
Sbjct: 294 DFGNFKPITPPTTHPSPE-SFEKLQISDNSPIEQGIEAVEHTSAHHS 339
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 335 AIPPAPFEETRADCGEGAPPPDPPTHSLPEPSLAKA 228
A PA + A G APPP P + PEP+ A A
Sbjct: 352 AAAPAGGYQGGAAAGAAAPPPAPAAAAAPEPAPAPA 387
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 338 TAIPPAPFEETRADCGEGAPPPDP-PTHSLPEPS 240
TA PP P + APPP P P H++P P+
Sbjct: 48 TAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPA 81
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -2
Query: 326 PAPFEETRADCGEGAPPPDP---PTHSLPEPS 240
PAP+ E A + APPP P P ++P P+
Sbjct: 35 PAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPA 66
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -2
Query: 335 AIPPAPFEE----TRADCGEGAPPPDPPTHSLPEP 243
A PPAP+ + A + PPP PP H P P
Sbjct: 111 APPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPP 145
>AC006624-1|AAF39785.1| 73|Caenorhabditis elegans Hypothetical
protein C53D5.3 protein.
Length = 73
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 284 APPPDPPTHSLPEPS 240
APPP PP+ S+P PS
Sbjct: 14 APPPPPPSSSIPAPS 28
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 293 GEGAPPPDPPTHSLPEPSLA 234
G+ APPP PP + P P+ A
Sbjct: 37 GDAAPPPPPPADAAPAPAPA 56
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 329 PPAPFEETRADCGEGAPPPDPPTHSLPEP 243
PP P + + G G+PPP P S P P
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP 267
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 329 PPAPFEETRADCGEGAPPPDPPTHSLPEP 243
PP P + + G G+PPP P S P P
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP 288
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 329 PPAPFEETRADCGEGAPPPDPPTHSLPEP 243
PP P + + G G+PPP P S P P
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPP 273
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 383 ATGVFPSCNGLGTRLTAIPPAPFEETRADCGEGAP--PPDPPTHSLP-EPSLAK 231
A+ V P N TA P+PF A +GAP PP P S P P +AK
Sbjct: 226 ASAVAPEANPAPVP-TATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPPVAK 278
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 383 ATGVFPSCNGLGTRLTAIPPAPFEETRADCGEGAP--PPDPPTHSLP-EPSLAK 231
A+ V P N TA P+PF A +GAP PP P S P P +AK
Sbjct: 226 ASAVAPEANPAPVP-TATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRPPVAK 278
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 299 DCGEGAPPPDPPTHSLPEPSLAKAIIRSYNPIFQNVT 189
D G PPP PP+H +PS + I Q++T
Sbjct: 2343 DIGINPPPPPPPSHVHTKPSATARMSSIAKDIEQSLT 2379
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 299 DCGEGAPPPDPPTHSLPEPSLAKAIIRSYNPIFQNVT 189
D G PPP PP+H +PS + I Q++T
Sbjct: 2343 DIGINPPPPPPPSHVHTKPSATARMSSIAKDIEQSLT 2379
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P ++ A++ YN I TT +HS
Sbjct: 171 PAPQVSTAVVEPYNSILTTHTTLEHS 196
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 312 FERRWRDGGEPRAQPVARRKHARRTK 389
+ERRWR E R + + R+K R K
Sbjct: 421 YERRWRIEEEERLEEIRRKKEEERKK 446
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P ++ A++ YN I TT +HS
Sbjct: 171 PAPQVSTAVVEPYNSILTTHTTLEHS 196
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P ++ A++ YN I TT +HS
Sbjct: 171 PAPQVSTAVVEPYNSILTTHTTLEHS 196
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P ++ A++ YN I TT +HS
Sbjct: 173 PAPQVSTAVVEPYNSILTTHTTLEHS 198
>U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical
protein R11F4.3 protein.
Length = 418
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 344 RLTAIPPAPFEETRADCGEGAPPPDPPTHSLPEPSLAKAIIRSYNP 207
R +PP P T PPP PPT + P P + + R P
Sbjct: 161 RFAEVPPIPDAPTNPPT-TTTPPPPPPTRA-PRPIIPTEVRRPQMP 204
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P ++ A++ YN I TT +HS
Sbjct: 172 PAPQVSTAVVEPYNSILTTHTTLEHS 197
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P ++ A++ YN I TT +HS
Sbjct: 171 PAPQVSTAVVEPYNSILTTHTTLEHS 196
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P ++ A++ YN I TT +HS
Sbjct: 171 PAPQVSTAVVEPYNSILTTHTTLEHS 196
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P ++ A++ YN I TT +HS
Sbjct: 173 PAPQVSTAVVEPYNSILTTHTTLEHS 198
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P ++ A++ YN I TT +HS
Sbjct: 173 PAPQVSTAVVEPYNSILTTHTTLEHS 198
>U27312-5|AAA68249.2| 121|Caenorhabditis elegans Hypothetical
protein F26A1.9 protein.
Length = 121
Score = 27.1 bits (57), Expect = 9.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 317 FEETRADCGEGAPPPDPPTH-SLPEPSLAKAII 222
+++T +GA PP PP S P+PSL ++ I
Sbjct: 52 YDDTGVITEDGAAPPRPPPQISKPKPSLPESSI 84
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 251 PEPSLAKAIIRSYNPIFQNVTTFKHS 174
P P + A++ YN I TT +HS
Sbjct: 171 PAPQVCTAVVEPYNSILTTHTTLEHS 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,623,738
Number of Sequences: 27780
Number of extensions: 223382
Number of successful extensions: 1238
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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