Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_H12
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    78   3e-15
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    78   3e-15
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    77   4e-15
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788     27   7.6  
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83...    27   7.6  

>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 77.8 bits (183), Expect = 3e-15
 Identities = 31/68 (45%), Positives = 44/68 (64%)
 Frame = +1

Query: 91  RCGXSSYHIQKSKCAQCGYPAXKLRSYHWSVXAXXXXXXXXXXMRHLKIVRRRFRNGFKE 270
           RCG  S+H+QKS C+ CGYPA ++R Y+WSV A          MR+++ V RRF++ F+E
Sbjct: 42  RCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFRE 101

Query: 271 GKPTPPKK 294
           G    P+K
Sbjct: 102 GTEATPRK 109



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +3

Query: 36 KGTSSFGKRRNKTHTLCTK 92
          KGT SFGKRRNKTHTLC +
Sbjct: 24 KGTGSFGKRRNKTHTLCVR 42


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 77.8 bits (183), Expect = 3e-15
 Identities = 31/68 (45%), Positives = 44/68 (64%)
 Frame = +1

Query: 91  RCGXSSYHIQKSKCAQCGYPAXKLRSYHWSVXAXXXXXXXXXXMRHLKIVRRRFRNGFKE 270
           RCG  S+H+QKS C+ CGYPA ++R Y+WSV A          MR+++ V RRF++ F+E
Sbjct: 21  RCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFRE 80

Query: 271 GKPTPPKK 294
           G    P+K
Sbjct: 81  GTEATPRK 88



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +3

Query: 30 MTKGTSSFGKRRNKTHTLCTK 92
          M KGT SFGKRRNKTHTLC +
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVR 21


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 31/68 (45%), Positives = 44/68 (64%)
 Frame = +1

Query: 91  RCGXSSYHIQKSKCAQCGYPAXKLRSYHWSVXAXXXXXXXXXXMRHLKIVRRRFRNGFKE 270
           RCG  S+H+QKS C+ CGYPA ++R Y+WSV A          MR+L+ V +RF++ F+E
Sbjct: 21  RCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYLRHVPKRFKSNFRE 80

Query: 271 GKPTPPKK 294
           G    P+K
Sbjct: 81  GTEAAPRK 88



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +3

Query: 30 MTKGTSSFGKRRNKTHTLCTK 92
          M KGT SFGKRRNKTHTLC +
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVR 21


>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
          Length = 326

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 144 ISCXKITILPLVSEX*AQEDYWNW--PHASFEDC 239
           I+   +T +  +S   + +D W W  PH  +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149


>03_01_0104 -
           830884-831282,831511-832205,832368-833387,833570-833696,
           834342-834709,834780-835059,835137-835466
          Length = 1072

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 69  KTHTLCTKMWXIVISHSKIKMRPMWIS 149
           K  T C K W  V+ H KI+   +W S
Sbjct: 508 KDGTFCGKPWRNVLEHLKIQDTDLWSS 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,513,524
Number of Sequences: 37544
Number of extensions: 142348
Number of successful extensions: 257
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)