Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_H07
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    63   3e-11
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    48   9e-07
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    37   0.003
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    32   0.083
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    29   0.77 
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   7.2  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.2  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    25   7.2  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   7.2  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   9.5  

>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 29/47 (61%), Positives = 36/47 (76%)
 Frame = +1

Query: 82  KISFKNLKRVAKELGENLTDEELHEMIXEADXXGDGEINQEEFLRIM 222
           KIS +NL+RVAKEL EN+ D+EL  MI E D   DGEIN++EF+ IM
Sbjct: 126 KISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIM 172



 Score = 31.9 bits (69), Expect = 0.083
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 85  ISFKNLKRVAKELGENLTDEELHEMIXEADXXGDGEINQEEFLRIM 222
           I +  L+   + LG N    E+ +++ + D  G G +  E+F+R+M
Sbjct: 54  IDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVM 99


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = +1

Query: 85  ISFKNLKRVAKELGENLTDEELHEMIXEADXXGDGEINQEEFLRIM 222
           I+ + L  V   LGE L+ EE+ +MI EAD  GDG IN EEF R++
Sbjct: 102 ITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVI 147



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +1

Query: 85  ISFKNLKRVAKELGENLTDEELHEMIXEADXXGDGEINQEEFLRIM 222
           I+   L  V + LG++ T  EL +MI E D  G+G I+  EFL +M
Sbjct: 29  ITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMM 74



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 52  VNSVRPRSKCKISFKN-LKRVAKELGENLTDEELHEMIXEADXXGDGEINQEEFLRIM 222
           +N V       I F   L  +A+++ +   +EE+ E     D  G+G I  EE   ++
Sbjct: 54  INEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVL 111


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +1

Query: 85  ISFKNLKRVAKELGENLTDEELHEMIXEADXXGDGEINQEEFLRI 219
           I F++L+R   +LGENLT E+L  M+  A    +G++++EEF  +
Sbjct: 29  IDFEDLRRSCAQLGENLTKEQLQLMLDLAGT--NGKVSREEFAEL 71


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 115 KELGENLTDEELHEMIXEADXXGDGEINQEEFL-RIM 222
           K LGE L+D E+  M+ EAD    G  +  +F+ RIM
Sbjct: 105 KTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIM 141


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 85  ISFKNLKRVAKELGENLTDEELHEMIXEADXXGDGEINQEEFLRIM 222
           I    L+ V   LGE L++EE+ E++ +     DG +N  +F++++
Sbjct: 94  IGVGELRYVLTSLGEKLSNEEMDELL-KGVPVKDGMVNYHDFVQMI 138


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 512 IGMYLICLQ*KLMRC-NFRIRNTLGLFF 432
           +G + +  + KL+ C  F I NTLGLF+
Sbjct: 20  LGFFFVIFE-KLLSCLAFMIHNTLGLFY 46


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  ISFKNLKRVAKELGENLTDE 144
           I F+N+++  +ELG++L DE
Sbjct: 297 IGFENIEQYLRELGKSLVDE 316


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +1

Query: 121 LGENLTDEELHEM----IXEADXXGDGEINQEEFLRIM 222
           +G NL +++L ++    I E D   DG+I+ EEF  I+
Sbjct: 123 VGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKDIV 160


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 91  FKNLKRVAKELGENLTDEELHEMIXEADXXGDGEINQEE 207
           F +   V  +  E   +EE  EM  E D  G+G+  +EE
Sbjct: 164 FDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 124 GENLTDEELHEMIXEADXXGDGEINQEEFLR 216
           G+NL    LH+ + E +  G  E+N  +FL+
Sbjct: 58  GDNLIS--LHKSLVEIESLGGNEVNVSDFLK 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,731
Number of Sequences: 5004
Number of extensions: 37141
Number of successful extensions: 76
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)