Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_H04
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    77   2e-15
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    76   3e-15
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    29   0.52 
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   1.6  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   4.8  
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    25   6.4  

>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 32/47 (68%), Positives = 39/47 (82%)
 Frame = +3

Query: 234 EIEYYALLAXTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 374
           E+EYYA+L+   VHHYSGNNI+LGTACGK +RV  LA+ D GDSDI+
Sbjct: 69  ELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115



 Score = 74.5 bits (175), Expect = 8e-15
 Identities = 35/58 (60%), Positives = 41/58 (70%)
 Frame = +2

Query: 47  TLPKWLQQRNRKRPSSQLNSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 220
           T P     +  K+    +NS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPP
Sbjct: 7   TAPVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPP 64


>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 76.2 bits (179), Expect = 3e-15
 Identities = 32/47 (68%), Positives = 39/47 (82%)
 Frame = +3

Query: 234 EIEYYALLAXTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDII 374
           E+EYYA+L+   VHHY+G NI+LGTACGK +RV  LAITD GDSDI+
Sbjct: 61  ELEYYAMLSKANVHHYAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107



 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 31/50 (62%), Positives = 38/50 (76%)
 Frame = +2

Query: 71  RNRKRPSSQLNSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 220
           +  K+    +N++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PP
Sbjct: 7   KKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPP 56


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 38  LAFTLPKWLQQRNRKRPSSQLNSRLALVMKSGKY 139
           L ++L +WL   N K PS+Q +  L+L  K  ++
Sbjct: 129 LGYSLIEWLNPMNLKEPSNQESDTLSLTEKFSRF 162


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 122 MKSGKYCLGYKQTLKTLRQGKAKLVI 199
           + SGKYC G   T+  L++G  + ++
Sbjct: 293 LDSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +2

Query: 95  QLNSRLALVMKSG---KYCL-GYKQTLKTLRQGKAKLVIIAKNAPP 220
           +LN ++   +K     K+ L G K+ +K +R+G+  LVI+A +  P
Sbjct: 36  KLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISP 81


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 56  KWLQQRNRKRPSSQLNS 106
           KW+QQ++R+    QLN+
Sbjct: 40  KWIQQKSREEAEKQLNN 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,193
Number of Sequences: 5004
Number of extensions: 30178
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)