Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_H04
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    90   8e-19
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    88   3e-18
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965...    87   1e-17
11_03_0099 - 9983044-9983052,9983145-9983939,9984031-9984301,998...    30   0.91 
03_05_0830 + 28034179-28035492                                         29   2.1  
08_01_0098 - 700443-700660,701112-701268,701586-701678,701763-70...    28   3.7  
07_03_1085 - 23851852-23853165                                         27   8.5  

>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 90.2 bits (214), Expect = 8e-19
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +3

Query: 234 EIEYYALLAXTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 386
           EIEYYA+L    VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 100 EIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150



 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 29/54 (53%), Positives = 38/54 (70%)
 Frame = +2

Query: 59  WLQQRNRKRPSSQLNSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 220
           W+    +K+ +  +N++L LVMKSGKY LGYK  LKTLR  K KL+I+A N PP
Sbjct: 42  WVVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPP 95


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 35/53 (66%), Positives = 44/53 (83%)
 Frame = +3

Query: 234 EIEYYALLAXTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 392
           EIEYYA+L    V+H++GNN++LGTACGKYYRVC L++ DPGDSDI   LPE+
Sbjct: 177 EIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229



 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 29/47 (61%), Positives = 35/47 (74%)
 Frame = +2

Query: 80  KRPSSQLNSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 220
           K+ +  +N++L LVMKSGKY LGYK  LKTLR  K KLVI+A N PP
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPP 172


>01_01_1199 -
           9657169-9657254,9657369-9657395,9657485-9657553,
           9657922-9658023,9659895-9660000,9660145-9660165
          Length = 136

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 36/49 (73%), Positives = 42/49 (85%)
 Frame = +3

Query: 234 EIEYYALLAXTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 380
           EIEYYA+LA   VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 59  EIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 29/50 (58%), Positives = 37/50 (74%)
 Frame = +2

Query: 71  RNRKRPSSQLNSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 220
           +  K+ +  +N++L LVMKSGKY LGYK  L+TLR  KAKLVII+ N PP
Sbjct: 5   KKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPP 54


>11_03_0099 -
           9983044-9983052,9983145-9983939,9984031-9984301,
           9984857-9985056
          Length = 424

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 71  RNRKRPSSQLNSRLALVMKS-GKYCLGYKQTLKTLRQGKAKLVIIAK 208
           RNR R   Q+  R   + K+ G++C  YK+       G+ +L ++ K
Sbjct: 193 RNRMRQEKQIKDRFHKIKKNVGRFCCAYKEVKSIYVSGQNELQLMEK 239


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 128 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 211
           +GKY  G   TLKTL  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326


>08_01_0098 -
           700443-700660,701112-701268,701586-701678,701763-702149,
           702755-702829,703486-703609,703693-703832,703904-703993,
           704254-704298,704917-705042,705138-705272,705966-706451,
           706539-706596,706728-706855,707209-707463
          Length = 838

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +1

Query: 163 ENSSTRQSKAGYHR*KCSSA*GNLRLNTTPS*LXQVFTTTAGTT 294
           EN+++++SK+ ++  KC++   N+ L      + + F+   G T
Sbjct: 657 ENTASKESKSNFYSDKCTAYMSNIDLTANEEHIRRFFSDIGGVT 700


>07_03_1085 - 23851852-23853165
          Length = 437

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 128 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 211
           +GKY  G   TLK L  G  + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,196,821
Number of Sequences: 37544
Number of extensions: 212448
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)