Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_H04
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...    98   3e-21
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.27 
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    28   4.4  
AC084197-35|AAN63424.1|  505|Caenorhabditis elegans Puf (pumilio...    27   5.8  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   7.6  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score = 98.3 bits (234), Expect = 3e-21
 Identities = 42/55 (76%), Positives = 49/55 (89%)
 Frame = +3

Query: 234 EIEYYALLAXTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEASA 398
           EIEYYA+LA TGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII ++P  SA
Sbjct: 59  EIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSVPSESA 113



 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 30/47 (63%), Positives = 39/47 (82%)
 Frame = +2

Query: 80  KRPSSQLNSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 220
           ++ +  +NSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PP
Sbjct: 8   QKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPP 54


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +2

Query: 116 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 211
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 119 VMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPPKE 229
           V ++ K   G K     L++ KAKL++  K A  PK+
Sbjct: 100 VRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKK 136


>AC084197-35|AAN63424.1|  505|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 11 protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 150 YPKQYFPDFITKARRELS*LDGLFLFLCCNHFGS 49
           YP +   D   K  R+L     +FL LCCN FG+
Sbjct: 166 YPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGN 199


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 243 YYALLAXTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 368
           +Y LLA  G+     + +ELGTA   YY +    +T  G  D
Sbjct: 252 FYCLLA--GLSREEKSELELGTAADYYYLIQGKTLTAEGRDD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,493,770
Number of Sequences: 27780
Number of extensions: 182326
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)